Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p24
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   8.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   8.1  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 695 VSRSAAVTVVRFRYTCLSTINLLSPEGHNLQESESMT 805
           VS+   + + R    CL +I L +PE   L+  + +T
Sbjct: 320 VSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVT 356


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 695 VSRSAAVTVVRFRYTCLSTINLLSPEGHNLQESESMT 805
           VS+   + + R    CL +I L +PE   L+  + +T
Sbjct: 320 VSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVT 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,841
Number of Sequences: 438
Number of extensions: 5814
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)