Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p20
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    56   5e-10
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 55.6 bits (128), Expect = 5e-10
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
 Frame = -1

Query: 760 HYQTTGPEIWRQTGHRVDXXXXXXXXXXXXXXXTRYLKEKNPDLKAYVVEPEGA--QPIR 587
           HY  T  EIW+Q   ++D                R LKE +P++K   V+P+G+   P  
Sbjct: 191 HYDQTAIEIWKQCEGKIDYLVAGAGTGGTISGIGRKLKELSPNIKIIAVDPKGSILDPSS 250

Query: 586 GLPVIKPLHLLQGSGYGCVPNLFKREYMDGTLSVSDEEAMEYKKLIGEKEGLYVG 422
                   + ++G GY  +P +  R  +D  +   D E++   +++  +EGL  G
Sbjct: 251 DSQNEVGFYEVEGIGYDFIPTVLDRNVIDKWIKTEDNESLNAARMLIRQEGLLCG 305


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 575 DWQSSYWLSAFRFNNVRLQIWI 640
           +W S +W SA+++N  R Q ++
Sbjct: 163 NWLSVFWGSAWQWNEERKQYYL 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,660
Number of Sequences: 438
Number of extensions: 4230
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)