Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p16
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   3.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 178 FYNNTFYRNKCIEYLSKIEKLI 113
           F + T YRNK ++Y +++  +I
Sbjct: 93  FSSVTLYRNKTVKYSARMHAII 114


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 517 ESFYKYEKNCFRSIMKYLRNLSSNETLVIQN 425
           ESF++   N F    KY++ + + E+   Q+
Sbjct: 222 ESFHRLTSNTFDYDPKYIKMMDAGESFTAQD 252


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 663 GTNINFELLIFCKGRPKVNVNSISLG 740
           G+NIN   +I C G+  V    I  G
Sbjct: 237 GSNINISQVIACVGQQNVEGKRIPFG 262


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 734 FRSIIKSLPFDRFIY 778
           F ++IK + FDRF +
Sbjct: 3   FNNVIKYINFDRFFF 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,032
Number of Sequences: 438
Number of extensions: 4135
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)