Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p14
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   220   2e-58

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  220 bits (538), Expect = 2e-58
 Identities = 114/219 (52%), Positives = 142/219 (64%), Gaps = 1/219 (0%)
 Frame = -1

Query: 811 PNFISTLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXGFIV 632
           P     LF FFGHPEVYILI+P FG++SHII      K  F               G +V
Sbjct: 235 PVLYQHLFWFFGHPEVYILIMPAFGVVSHIIPS-LAHKPIFGKEGMLWAMLSIALLGLMV 293

Query: 631 *AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVF 455
            +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ 
Sbjct: 294 WSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLI 353

Query: 454 LFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLN 275
           LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   GL  N
Sbjct: 354 LFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYN 412

Query: 274 SYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 158
             +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 413 ETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 834 FDPAGGGDPILYQH 793
           + P GGGDP+LYQH
Sbjct: 227 YAPEGGGDPVLYQH 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,742
Number of Sequences: 5004
Number of extensions: 43692
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)