Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p07
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    90   7e-20
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    90   7e-20
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    60   8e-11
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   1.6  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   3.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.6  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    24   6.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    23   8.7  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    23   8.7  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 90.2 bits (214), Expect = 7e-20
 Identities = 39/75 (52%), Positives = 52/75 (69%)
 Frame = -1

Query: 230 IGLCAYSGYKIYPGHGKSMVKVDGKTFTFLNSKCXAAHLMRRTPRKVTWTVLYRRKFKKG 51
           + +C++SG K+YPG G+  V+ D K F F+N K  +  L R+ PR+++WTVLYRR  KKG
Sbjct: 3   VEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKG 62

Query: 50  XVXEQAKKRTRRTQK 6
              E AKKRTRRT K
Sbjct: 63  ISEEHAKKRTRRTVK 77


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 90.2 bits (214), Expect = 7e-20
 Identities = 39/75 (52%), Positives = 52/75 (69%)
 Frame = -1

Query: 230 IGLCAYSGYKIYPGHGKSMVKVDGKTFTFLNSKCXAAHLMRRTPRKVTWTVLYRRKFKKG 51
           + +C++SG K+YPG G+  V+ D K F F+N K  +  L R+ PR+++WTVLYRR  KKG
Sbjct: 3   VEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKG 62

Query: 50  XVXEQAKKRTRRTQK 6
              E AKKRTRRT K
Sbjct: 63  ISEEHAKKRTRRTVK 77


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 60.1 bits (139), Expect = 8e-11
 Identities = 27/63 (42%), Positives = 33/63 (52%)
 Frame = -1

Query: 221 CAYSGYKIYPGHGKSMVKVDGKTFTFLNSKCXAAHLMRRTPRKVTWTVLYRRKFKKGXVX 42
           C +    +YPGHG   V+ D K F F  SKC     M+R PRKV WT  YR+   K  V 
Sbjct: 6   CYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVY 65

Query: 41  EQA 33
           + A
Sbjct: 66  DTA 68


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 150 EGFSIHFNHGLAMAWIYFVSTI 215
           +GF  H+  G A+ W+YF + +
Sbjct: 430 DGFHKHYLPGTAIDWVYFAADV 451


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -1

Query: 218 AYSGYKIYPGHGKSMV 171
           AY+GYK+Y G+G +++
Sbjct: 154 AYNGYKVYWGNGCAII 169


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 211 VDTKYIQAMASPWLKWM 161
           V+ K+IQ +   W+KW+
Sbjct: 137 VEQKWIQFLHKSWMKWL 153


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +2

Query: 164 PL*PWTCHGLDIFCIHYXRXXRSSXXPDKTXRF 262
           P  PWTC    +  +H       S  P    RF
Sbjct: 112 PTKPWTCGHAYVSLVHQSNPKNVSKEPPSVIRF 144


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 215 YSGYKIYPGHGKSMVKVDGKTFTFLNSKCXAAHLMRR 105
           ++ YK +        KV GK F F ++   ++++M R
Sbjct: 654 WNSYKFFEAQAALYKKVTGKDFVFDDAATLSSNVMDR 690


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 153 GFSIHFNHGLAMAWIYFVSTI 215
           G++ HF +  A+ W  FVS I
Sbjct: 464 GWASHFVNAYAVCWTAFVSVI 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,208
Number of Sequences: 5004
Number of extensions: 20122
Number of successful extensions: 55
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)