Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p07
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    20   6.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   6.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   6.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   8.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   8.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   8.4  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 72  QAQVQKGPSGXTS 34
           Q++VQ+GP G  S
Sbjct: 106 QSEVQRGPGGRLS 118


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 72  VQDSPCYFTRSPPHQMGGXT 131
           V  S  + + + PH +GG T
Sbjct: 329 VDQSTVFLSWNAPHMLGGRT 348


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 167 VDGKTFTFLNSKCXAA 120
           +DG++FT  N  C  A
Sbjct: 240 IDGESFTLKNGICGMA 255


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 159 KNLHIPEFKM 130
           KNLH+P F +
Sbjct: 202 KNLHLPRFTL 211


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 159 KNLHIPEFKM 130
           KNLH+P F +
Sbjct: 202 KNLHLPRFTL 211


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 101 ESSASNGRLHILNS 142
           ESS   GR+HI N+
Sbjct: 400 ESSGMAGRVHISNA 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,374
Number of Sequences: 438
Number of extensions: 1453
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)