Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p06
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    27   2.4  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   5.6  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   7.4  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   9.7  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 176 GPIAFSCRRSVSCGKSSRQRTSCSMCRSW 262
           G      R +++CGK+     SC  CR W
Sbjct: 336 GETNLKMRHALTCGKNVVDEASCERCRFW 364


>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -3

Query: 527 LETIRENKLPTLMKNHKTGFPTRLLL 450
           LETI  +K P LMKNH   F  RL L
Sbjct: 35  LETIDLSKDPYLMKNHLGTFECRLCL 60


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -3

Query: 668 NDNRINFVEIDSFVYKLTGGKNTITRKSGDMNNLVPDRIMTRDMFTNLETIRENKLPTLM 489
           N N++N+++  +    +T  +       G +N L+PD +        L+   EN+L TL+
Sbjct: 499 NQNKMNYLKALTEHKLVTSTEEQFNALKGGLNELIPDSV--------LQIFNENELDTLL 550

Query: 488 KNHK 477
              +
Sbjct: 551 NGKR 554


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = -3

Query: 485 NHKTGFP-TRLLLPRGKAGGMKMLLYVIVSPLRMMENADLSMFESKNCESCMNCRWAALL 309
           NHKT    T  L+P+     +   L   +S +   E+  LS   +   +SC N  W  + 
Sbjct: 95  NHKTQVDFTEQLIPKKSLNKLNGTLRETMSRMPSFESISLSETSNALDDSCFNDDWITI- 153

Query: 308 DKMPLGFPLDR 276
            +     P+DR
Sbjct: 154 -ESEFSPPIDR 163


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 191 KMRWDRWVLRDYNLMNRMPMQSETYSLDNEMNMKT 87
           K+ W RWVLRD    + +P  S   SL +    KT
Sbjct: 168 KIGWGRWVLRD----STIPANSHPQSLPSNSIPKT 198


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 167 APSGPIAFSCRRSVSCGKSSRQRTSCSMCR 256
           +PS  +AF  RRS+  G     R S +M R
Sbjct: 149 SPSSNVAFGNRRSILAGNFILARASTAMAR 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,178
Number of Sequences: 5004
Number of extensions: 76459
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)