Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p04
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   0.43 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   2.3  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      23   4.0  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    23   5.3  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.3  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    23   5.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   7.0  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    23   7.0  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    23   7.0  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    23   7.0  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    22   9.3  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 76  LTSPLFEIRHWNGVTSKIYRLTAWLICGVVP 168
           L  P F + HW     + Y    WL C  +P
Sbjct: 251 LEMPFFALSHWYAFRIEDYDTPTWLSCARLP 281


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 85   PLFEIRHWNGVTSKIY 132
            PLF ++ WN +TS  +
Sbjct: 2155 PLFSMQRWNSITSMFF 2170


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -3

Query: 182 AAI*NGTTPQMSQAVSRYILDVTPFQCLISNNGLVSPELLCYYS 51
           ++I +   P +   V    +D   + C I+NN  + P  + +Y+
Sbjct: 442 SSIYSNDVPAIPPNVPYTFVDPYTYACYINNNSYLPPSYMDFYT 485


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 70  NCCVIIPSKIIICLIYLSEI 11
           NC V+ P  I+ CLI  S+I
Sbjct: 757 NCPVVDPEWIVECLISQSDI 776


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 171 ERDNATNEPSSKSVYFGRNTVPVSDLE*WAREPG 70
           E+DN     SS+S  +    V VS+L    R PG
Sbjct: 8   EKDNGLKRISSESEVWNFLDVTVSELNKQKRSPG 41


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 159 ATNEPSSKSVYFGRNTVPVSDLE*WAR 79
           A N P  +S+  GRN +    ++ WA+
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAK 181


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 88   LFEIRHWNGVTSKIYRLTAWLIC 156
            + E++ W G TS I +L  +L+C
Sbjct: 1147 IMEMKPWVGDTSLITQLKRFLMC 1169


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 143 AVSRYILDVTPFQCLISNNGLVSPELLCYY 54
           A SRYILD    Q + + + + +P L+ YY
Sbjct: 432 AYSRYILDTGAAQDVAALDFVQAPCLIGYY 461


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 76  LTSPLFEIRHWNGVTSK 126
           L SP++E  +W G+  K
Sbjct: 65  LVSPIYEYLYWGGLEGK 81


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 116 LRPKYTDLLLGSFVALSRSKSQP 184
           L P++TD+ LG    +    SQP
Sbjct: 370 LDPEFTDIFLGVLTEVCLDPSQP 392


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 158 PQMSQAVSRYILDVTPFQCLISNNGLVSPELLCY 57
           PQ  + +  Y +DV+ ++  I +   + P +L Y
Sbjct: 72  PQTHKGLDTYEIDVSTYKTHIGHPKFIEPFVLFY 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 713,526
Number of Sequences: 5004
Number of extensions: 10185
Number of successful extensions: 40
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)