Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p04
         (184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   0.59 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   1.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   1.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   3.1  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           18   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    18   9.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 0.59
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 44  NYYMFNLSLRD 12
           NYY+FNL++ D
Sbjct: 69  NYYLFNLAVSD 79


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 94  EIRHWNGVTSKIYRLTAWLICGVVPF 171
           E+RH   V +K Y     L  G+V F
Sbjct: 395 ELRHSRPVPAKKYDCVTLLFSGIVGF 420


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 94  EIRHWNGVTSKIYRLTAWLICGVVPF 171
           E+RH   V +K Y     L  G+V F
Sbjct: 395 ELRHSRPVPAKKYDCVTLLFSGIVGF 420


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 118 TSKIYRLTAWLIC 156
           TS +YRL  +L C
Sbjct: 34  TSALYRLKLYLFC 46



 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -2

Query: 180 CDLERDNATNEPSSKSVYFG 121
           CD +RD    + ++  + FG
Sbjct: 46  CDYDRDIIPEQKNATKIDFG 65


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 180 CDLERDNATNEPSSKSVYFG 121
           CDL +  + N+P  K +  G
Sbjct: 12  CDLLKKRSENDPFLKRLITG 31


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 150 EPSSKSVYFGR 118
           EPS++++ FGR
Sbjct: 313 EPSTQTIDFGR 323


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 58 IIPSKIIICLIYLSEI 11
          ++P  + ICL  L EI
Sbjct: 4  VVPWLLSICLFGLQEI 19


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -2

Query: 153 NEPSSKSVYFGRNTVPVSDL 94
           N P++  +     TVP++ L
Sbjct: 840 NTPTTSVISMSGTTVPITSL 859


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,260
Number of Sequences: 438
Number of extensions: 753
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)