Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15p02
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    29   0.068
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           27   0.21 
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           27   0.21 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 0.068
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 544 VVICNDVSISRSNRTQRVFSD 482
           +V CND+SI RS  T  V SD
Sbjct: 345 MVFCNDLSIDRSTNTMYVLSD 365


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 772 QYPEHLKVFTYEMDSELKMFPEPKRSQ 692
           +YPE+ + FT  MD+ L   P  KR Q
Sbjct: 57  KYPEYQRYFTAFMDTPLNELPANKRFQ 83


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 772 QYPEHLKVFTYEMDSELKMFPEPKRSQ 692
           +YPE+ + FT  MD+ L   P  KR Q
Sbjct: 57  KYPEYQRYFTAFMDTPLNELPANKRFQ 83


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 768 YCNSVSGSIVKGKST 812
           YC+ +SG++ KG+ T
Sbjct: 445 YCDVISGNLEKGRCT 459


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 160 KQVFES-NDIIATVVDLTPAVAGLSSTLTLGA-GAAAPKYGQ 41
           +Q+F S N         +PA A L S+L+  A  AAA  Y Q
Sbjct: 16  QQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQ 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,123
Number of Sequences: 438
Number of extensions: 5095
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)