Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15o20
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   1.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 499 SENKVILFPKYRIVQTNVHQVS 564
           S NKVI+ PKY I++ +  Q++
Sbjct: 235 SINKVIIHPKYDIIEKDDWQIN 256


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 551 YIKFQFTNKTNYEMKVSVFFNKMSSSHYYTFCSRTFP 661
           Y  +   +  N E K++ F   +  + YY F  + FP
Sbjct: 205 YSGWYLNHDYNLENKLNYFIEDIGLNTYYFFLRQAFP 241


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 551 YIKFQFTNKTNYEMKVSVFFNKMSSSHYYTFCSRTFP 661
           Y  +   +  N E K+  F   +  + YY F  + FP
Sbjct: 205 YSGWYLNHDYNLENKLIYFIEDIGLNTYYFFLRQAFP 241


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 63  ASRVFK*SYYLLIEFSYWAADNQNSEKDIIYHSI 164
           ASR+    ++L I   YW A    SE+ I Y+++
Sbjct: 426 ASRIVFPLFFLAINVFYWFAYLSRSER-INYYNV 458


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +2

Query: 527 NIESSKQMYIKFQFTNKTNYE--MKVSVFFNKMSSSHYYTFCSRTFPEVCERIANGLPTV 700
           N+E+ +   +        +Y+  + VS FF+++     YT C          + N L   
Sbjct: 111 NVEAEENYNLLEDIYETLSYDCDVDVSTFFDQLGQEVIYTACVGLLERAFRCLGNNLTAF 170

Query: 701 ST 706
            T
Sbjct: 171 LT 172


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 559 LDVHLFGRFDILEIKLLYFRFD 494
           ++V L+G+ D+L  K+L F ++
Sbjct: 372 VNVQLYGQLDLLVRKVLGFGYE 393


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 559 LDVHLFGRFDILEIKLLYFRFD 494
           ++V L+G+ D+L  K+L F ++
Sbjct: 372 VNVQLYGQLDLLVRKVLGFGYE 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,537
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)