Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15o13
         (333 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022326-1|AAH22326.2|   59|Homo sapiens small EDRK-rich factor ...    38   0.010
BC015491-1|AAH15491.2|   59|Homo sapiens small EDRK-rich factor ...    38   0.010
AF073298-1|AAC63516.1|   59|Homo sapiens small EDRK-rich factor ...    38   0.010
BC104738-1|AAI04739.1|  110|Homo sapiens small EDRK-rich factor ...    36   0.030
BC103687-1|AAI03688.1|  110|Homo sapiens small EDRK-rich factor ...    36   0.030
BC101970-1|AAI01971.1|  110|Homo sapiens SERF1B protein protein.       36   0.030
BC093882-1|AAH93882.1|  110|Homo sapiens small EDRK-rich factor ...    36   0.030
BC093880-1|AAH93880.1|  110|Homo sapiens small EDRK-rich factor ...    36   0.030
BC035932-1|AAH35932.1|  110|Homo sapiens small EDRK-rich factor ...    36   0.030
BC021174-1|AAH21174.1|   62|Homo sapiens small EDRK-rich factor ...    36   0.030
AF073519-1|AAC63518.1|  110|Homo sapiens small EDRK-rich factor ...    36   0.030
AF073518-1|AAC63517.1|   62|Homo sapiens small EDRK-rich factor ...    36   0.030
U27330-1|AAC50189.1|  374|Homo sapiens alpha (1,3) fucosyltransf...    29   2.6  
U27329-1|AAC50188.1|  374|Homo sapiens alpha (1,3) fucosyltransf...    29   2.6  
M81485-1|AAA98117.1|  374|Homo sapiens alpha(1,3)-fucosyltransfe...    29   2.6  
U71268-1|AAD00180.1|  575|Homo sapiens potential transcriptional...    28   7.9  
U71267-1|AAD00179.1|  642|Homo sapiens potential transcriptional...    28   7.9  
BC035590-1|AAH35590.1|  572|Homo sapiens CCR4-NOT transcription ...    28   7.9  
AL389980-1|CAB97536.1|  572|Homo sapiens NOT4, potential transcr...    28   7.9  
AF180475-1|AAF29829.1|  433|Homo sapiens Not4-Np protein.              28   7.9  

>BC022326-1|AAH22326.2|   59|Homo sapiens small EDRK-rich factor 2
          protein.
          Length = 59

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          MTRGNQR+LAR KN KKQ +  K K   +
Sbjct: 1  MTRGNQRELARQKNMKKQSDSVKGKRRDD 29


>BC015491-1|AAH15491.2|   59|Homo sapiens small EDRK-rich factor 2
          protein.
          Length = 59

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          MTRGNQR+LAR KN KKQ +  K K   +
Sbjct: 1  MTRGNQRELARQKNMKKQSDSVKGKRRDD 29


>AF073298-1|AAC63516.1|   59|Homo sapiens small EDRK-rich factor 2
          protein.
          Length = 59

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          MTRGNQR+LAR KN KKQ +  K K   +
Sbjct: 1  MTRGNQRELARQKNMKKQSDSVKGKRRDD 29


>BC104738-1|AAI04739.1|  110|Homo sapiens small EDRK-rich factor
          1B (centromeric) protein.
          Length = 110

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>BC103687-1|AAI03688.1|  110|Homo sapiens small EDRK-rich factor
          1B (centromeric) protein.
          Length = 110

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>BC101970-1|AAI01971.1|  110|Homo sapiens SERF1B protein protein.
          Length = 110

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>BC093882-1|AAH93882.1|  110|Homo sapiens small EDRK-rich factor
          1A, telomeric protein.
          Length = 110

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>BC093880-1|AAH93880.1|  110|Homo sapiens small EDRK-rich factor
          1A (telomeric) protein.
          Length = 110

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>BC035932-1|AAH35932.1|  110|Homo sapiens small EDRK-rich factor
          1A (telomeric) protein.
          Length = 110

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>BC021174-1|AAH21174.1|   62|Homo sapiens small EDRK-rich factor
          1A (telomeric) protein.
          Length = 62

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>AF073519-1|AAC63518.1|  110|Homo sapiens small EDRK-rich factor
          1, long isoform protein.
          Length = 110

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>AF073518-1|AAC63517.1|   62|Homo sapiens small EDRK-rich factor
          1, short isoform protein.
          Length = 62

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 94 MTRGNQRDLARAKNQKKQVEMQKKKNASE 8
          M RGNQR+LAR KN KK  E+ K K   +
Sbjct: 1  MARGNQRELARQKNMKKTQEISKGKRKED 29


>U27330-1|AAC50189.1|  374|Homo sapiens alpha (1,3)
           fucosyltransferase protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 321 WLWPAG*RRCVAFVLYTLIIAKSFFS 244
           WLW    RRC+A +L+ L++A  FFS
Sbjct: 11  WLW----RRCLAGLLFQLLVAVCFFS 32


>U27329-1|AAC50188.1|  374|Homo sapiens alpha (1,3)
           fucosyltransferase protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 321 WLWPAG*RRCVAFVLYTLIIAKSFFS 244
           WLW    RRC+A +L+ L++A  FFS
Sbjct: 11  WLW----RRCLAGLLFQLLVAVCFFS 32


>M81485-1|AAA98117.1|  374|Homo sapiens
           alpha(1,3)-fucosyltransferase protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 321 WLWPAG*RRCVAFVLYTLIIAKSFFS 244
           WLW    RRC+A +L+ L++A  FFS
Sbjct: 11  WLW----RRCLAGLLFQLLVAVCFFS 32


>U71268-1|AAD00180.1|  575|Homo sapiens potential transcriptional
           repressor NOT4Hp protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 82  NQRDLARAKNQKKQVEMQKKKNASE 8
           +Q +L R KN+KKQ + ++K+  SE
Sbjct: 71  SQEELQRIKNEKKQKQNERKQKISE 95


>U71267-1|AAD00179.1|  642|Homo sapiens potential transcriptional
           repressor NOT4Hp protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 82  NQRDLARAKNQKKQVEMQKKKNASE 8
           +Q +L R KN+KKQ + ++K+  SE
Sbjct: 71  SQEELQRIKNEKKQKQNERKQKISE 95


>BC035590-1|AAH35590.1|  572|Homo sapiens CCR4-NOT transcription
           complex, subunit 4 protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 82  NQRDLARAKNQKKQVEMQKKKNASE 8
           +Q +L R KN+KKQ + ++K+  SE
Sbjct: 71  SQEELQRIKNEKKQKQNERKQKISE 95


>AL389980-1|CAB97536.1|  572|Homo sapiens NOT4, potential
           transcriptional repressor, alternatively spliced product
           protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 82  NQRDLARAKNQKKQVEMQKKKNASE 8
           +Q +L R KN+KKQ + ++K+  SE
Sbjct: 71  SQEELQRIKNEKKQKQNERKQKISE 95


>AF180475-1|AAF29829.1|  433|Homo sapiens Not4-Np protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 82  NQRDLARAKNQKKQVEMQKKKNASE 8
           +Q +L R KN+KKQ + ++K+  SE
Sbjct: 71  SQEELQRIKNEKKQKQNERKQKISE 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,888,740
Number of Sequences: 237096
Number of extensions: 731983
Number of successful extensions: 1510
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)