Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15o12
(872 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC019315-1|AAH19315.1| 359|Homo sapiens N-acetylneuraminic acid... 121 3e-27
BC000008-1|AAH00008.1| 359|Homo sapiens N-acetylneuraminic acid... 121 3e-27
AL137073-4|CAI13886.1| 359|Homo sapiens N-acetylneuraminic acid... 121 3e-27
AK001659-1|BAA91818.1| 359|Homo sapiens protein ( Homo sapiens ... 121 3e-27
AF257466-1|AAF75261.1| 359|Homo sapiens N-acetylneuraminic acid... 119 2e-26
AL137073-5|CAI13887.1| 140|Homo sapiens N-acetylneuraminic acid... 91 4e-18
AL137073-6|CAI13888.1| 115|Homo sapiens N-acetylneuraminic acid... 91 6e-18
AK057389-1|BAB71463.1| 669|Homo sapiens protein ( Homo sapiens ... 30 9.5
>BC019315-1|AAH19315.1| 359|Homo sapiens N-acetylneuraminic acid
synthase (sialic acid synthase) protein.
Length = 359
Score = 121 bits (292), Expect = 3e-27
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Frame = -3
Query: 846 RQFYDIISSDHKQFCLLHLHIGVSGAIEDCNLTVLQDYKNTF-DVPVGYSGQEXXXXXXX 670
+Q Y I+ + FC L ED NL V+ +Y+ F D+P+GYSG E
Sbjct: 166 KQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISV 225
Query: 669 XXXXXXXXXLEKHITLDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEI 490
LE+HITLDK+ KG+DH SL P E +LVR VR++E +LG+P K+++ E+
Sbjct: 226 AAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEM 285
Query: 489 PCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYKTLVYDKKEDEPL 310
C +KL KS+V +G IL + +KV EPKG + +++ K ++ +ED+ +
Sbjct: 286 ACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTI 345
Query: 309 NE 304
E
Sbjct: 346 ME 347
>BC000008-1|AAH00008.1| 359|Homo sapiens N-acetylneuraminic acid
synthase (sialic acid synthase) protein.
Length = 359
Score = 121 bits (292), Expect = 3e-27
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Frame = -3
Query: 846 RQFYDIISSDHKQFCLLHLHIGVSGAIEDCNLTVLQDYKNTF-DVPVGYSGQEXXXXXXX 670
+Q Y I+ + FC L ED NL V+ +Y+ F D+P+GYSG E
Sbjct: 166 KQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISV 225
Query: 669 XXXXXXXXXLEKHITLDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEI 490
LE+HITLDK+ KG+DH SL P E +LVR VR++E +LG+P K+++ E+
Sbjct: 226 AAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEM 285
Query: 489 PCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYKTLVYDKKEDEPL 310
C +KL KS+V +G IL + +KV EPKG + +++ K ++ +ED+ +
Sbjct: 286 ACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTI 345
Query: 309 NE 304
E
Sbjct: 346 ME 347
>AL137073-4|CAI13886.1| 359|Homo sapiens N-acetylneuraminic acid
synthase (sialic acid synthase) protein.
Length = 359
Score = 121 bits (292), Expect = 3e-27
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Frame = -3
Query: 846 RQFYDIISSDHKQFCLLHLHIGVSGAIEDCNLTVLQDYKNTF-DVPVGYSGQEXXXXXXX 670
+Q Y I+ + FC L ED NL V+ +Y+ F D+P+GYSG E
Sbjct: 166 KQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISV 225
Query: 669 XXXXXXXXXLEKHITLDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEI 490
LE+HITLDK+ KG+DH SL P E +LVR VR++E +LG+P K+++ E+
Sbjct: 226 AAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEM 285
Query: 489 PCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYKTLVYDKKEDEPL 310
C +KL KS+V +G IL + +KV EPKG + +++ K ++ +ED+ +
Sbjct: 286 ACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTI 345
Query: 309 NE 304
E
Sbjct: 346 ME 347
>AK001659-1|BAA91818.1| 359|Homo sapiens protein ( Homo sapiens
cDNA FLJ10797 fis, clone NT2RP4000657, weakly similar to
SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN SPSE. ).
Length = 359
Score = 121 bits (292), Expect = 3e-27
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 1/182 (0%)
Frame = -3
Query: 846 RQFYDIISSDHKQFCLLHLHIGVSGAIEDCNLTVLQDYKNTF-DVPVGYSGQEXXXXXXX 670
+Q Y I+ + FC L ED NL V+ +Y+ F D+P+GYSG E
Sbjct: 166 KQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISV 225
Query: 669 XXXXXXXXXLEKHITLDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEI 490
LE+HITLDK+ KG+DH SL P E +LVR VR++E +LG+P K+++ E+
Sbjct: 226 AAVALGTKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEM 285
Query: 489 PCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYKTLVYDKKEDEPL 310
C +KL KS+V +G IL + +KV EPKG + +++ K ++ +ED+ +
Sbjct: 286 ACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTI 345
Query: 309 NE 304
E
Sbjct: 346 ME 347
>AF257466-1|AAF75261.1| 359|Homo sapiens N-acetylneuraminic acid
phosphate synthase protein.
Length = 359
Score = 119 bits (286), Expect = 2e-26
Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Frame = -3
Query: 846 RQFYDIISSDHKQFCLLHLHIGVSGAIEDCNLTVLQDYKNTF-DVPVGYSGQEXXXXXXX 670
+Q Y I+ + FC L ED NL V+ +Y+ F D+P+GYSG E
Sbjct: 166 KQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISV 225
Query: 669 XXXXXXXXXLEKHITLDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEI 490
LE+HITLDK+ KG+DH SL P E +LVR VR++E +LG+P K+++ E+
Sbjct: 226 AAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEM 285
Query: 489 PCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYKTLVYDKKEDEPL 310
C +KL KS+V +G IL + +KV EPK + +++ K ++ +ED+ +
Sbjct: 286 ACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKAYPPEDIFNLVGKKVLVTVEEDDTI 345
Query: 309 NE 304
E
Sbjct: 346 ME 347
>AL137073-5|CAI13887.1| 140|Homo sapiens N-acetylneuraminic acid
synthase (sialic acid synthase) protein.
Length = 140
Score = 91.5 bits (217), Expect = 4e-18
Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Frame = -3
Query: 846 RQFYDIISSDHKQFCLLHLHIGVSGAIEDCNLTVLQDYKNTF-DVPVGYSGQEXXXXXXX 670
+Q Y I+ + FC L ED NL V+ +Y+ F D+P+GYSG E
Sbjct: 25 KQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISV 84
Query: 669 XXXXXXXXXLEKHITLDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVV 502
LE+HITLDK+ KG+DH SL P E +LVR VR++E +LG+P K+++
Sbjct: 85 AAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLL 140
>AL137073-6|CAI13888.1| 115|Homo sapiens N-acetylneuraminic acid
synthase (sialic acid synthase) protein.
Length = 115
Score = 90.6 bits (215), Expect = 6e-18
Identities = 43/99 (43%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = -3
Query: 765 EDCNLTVLQDYKNTF-DVPVGYSGQEXXXXXXXXXXXXXXXXLEKHITLDKSMKGTDHVC 589
ED NL V+ +Y+ F D+P+GYSG E LE+HITLDK+ KG+DH
Sbjct: 1 EDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSA 60
Query: 588 SLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPCIDKL 472
SL P E +LVR VR++E +LG+P K+++ E+ C +K+
Sbjct: 61 SLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNEKV 99
>AK057389-1|BAB71463.1| 669|Homo sapiens protein ( Homo sapiens
cDNA FLJ32827 fis, clone TESTI2003109, weakly similar to
VACUOLAR PROTEIN 8. ).
Length = 669
Score = 30.3 bits (65), Expect = 9.5
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 255 LLCSNIRNNGFFNRNHLR*GVHLLSYRILEFCI*RLPSEARSGLLV 392
L SNI N+GF++ + G LLS + E C+ + PS+ R+ LL+
Sbjct: 562 LSSSNIINDGFYDYGRINPGTKLLSLK--ELCL-QEPSDLRAVLLI 604
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,048,908
Number of Sequences: 237096
Number of extensions: 2256368
Number of successful extensions: 4251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4233
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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