Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15o02
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch...    43   7e-05
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    31   0.16 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    30   0.50 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   0.66 
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    28   1.5  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    27   4.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   6.1  

>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
           Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 31/103 (30%), Positives = 55/103 (53%)
 Frame = -1

Query: 631 QGKVLYCLKEKFRESKLTTDCENEVANILKEQALNYRLDPLLEKLCQAEIQTICSVQNDI 452
           +GKV+  + ++  E      C+ E AN++KE+ LN +LD L E +  AE + +   ++++
Sbjct: 37  KGKVIAVIHQQLIEF-FEKSCKQEYANLIKERDLNKKLDMLDECIHDAEFRKLHG-ESEV 94

Query: 451 TISDGQVEECLKNALLKDKIVSAECSREIAKLIEQTEVDIEAD 323
            IS+ Q +E LK  L   K       RE+   + Q  +DI+ +
Sbjct: 95  DISNKQPQEILKAHLYSHK-------RELLDKLNQDLLDIDKE 130


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
 Frame = -1

Query: 706 VNSCKSDINAHCSEILANEPQDVELQGKVLYCLKEKFRESKLTTDCENEVANI------L 545
           V S K +I+    E L    +  +   ++L   KEKFR +KL    ENE+ ++      +
Sbjct: 52  VLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRIAKLLNITENEIMSLESQLQKM 111

Query: 544 KEQALNY-RLDPLLEKLCQAE 485
           KEQ L     +   E +CQ+E
Sbjct: 112 KEQLLQLEERENTSEDICQSE 132


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = -1

Query: 607 KEKFRESKLTTDCEN--EVANILKEQALNYRLD-PLLEKLCQAEIQTICSVQNDITISDG 437
           K+K  ES LT+D EN  E+ + L+++ L+ +   P LE+   +++     +  D +    
Sbjct: 296 KQKAEESTLTSDLENLREMLSELEQKTLDLKHGAPSLEEAVMSKMHESSLLSKDSSSLAQ 355

Query: 436 QVEECLKNA 410
            V E +KNA
Sbjct: 356 AVAEAVKNA 364


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
 Frame = +3

Query: 45  KIMPTIEIPTTKKYFFDGDDDML**TSPSVSNLAATNLYISNLLVSSFSHAASNFRVPSF 224
           K +P+  +PT+ K        M+  T+PSVSN   ++  I +   SS+ H +  F+V S 
Sbjct: 413 KKIPSTTLPTSSK--------MITTTTPSVSNNTQSSFLIISTFTSSYEH-SEPFKVSSV 463

Query: 225 DIIFKHFRRL------PAPCSRSLQYFNRSKAQALSNNGSASMSTSVCSINLAISREHSA 386
            +   +F  +        P + S    N +   ++ ++ S+  + SV S   + S   + 
Sbjct: 464 PLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNF 523

Query: 387 DTILSFNKAFLRHSSTCPSEIVIS 458
            T ++ + +     S+ P+ IV S
Sbjct: 524 TTPITISTSL----SSFPTTIVSS 543


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 583 LTTDCENEVANILKEQALNYRL-DPLLEKLCQAEIQTICSVQNDITISDGQVEECLKNAL 407
           L  D + E A ++ EQ ++     PLL++  +AEI  I ++++     D ++ + L  AL
Sbjct: 135 LPNDTKIEYAKLMTEQEMDEEAGQPLLDQKAKAEIDRILALRDTGVNVDDELRKILTGAL 194


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 549 ILATSFSQSVVNFDSLNFS-FRQYNTFPCS 635
           I  T+ S SV+N+DS NFS   Q N  P S
Sbjct: 389 ISPTALSNSVLNYDSNNFSGTPQINVVPSS 418


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +1

Query: 181  VPFHMLPPTSVFHHLI*FLNISDVSQHHVLDLYNTSTDRKHRLFLTTDQPR 333
            +  +M P     H L+  +N S   + H++ ++  +    H LF    Q R
Sbjct: 1911 ISLNMTPNFKPSHELVQLINSSPFYRKHIISVHQVTRSDLHVLFAIAHQMR 1961


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,559,472
Number of Sequences: 5004
Number of extensions: 74759
Number of successful extensions: 246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)