Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15o02
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
 Frame = +1

Query: 235 LNISDVSQH-----HVLDLYNTSTDRKHRLFL 315
           LNISD++ +     H  D+Y +S D+++ LFL
Sbjct: 787 LNISDIALYPSQTTHGYDIYASSIDKENILFL 818


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 41  YKNYAYNRNTYN 76
           Y NY YN N YN
Sbjct: 101 YNNYNYNNNNYN 112


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 142 KFETLGDVYHSISSSPSKK 86
           K ET+GD Y  +S +P K+
Sbjct: 467 KVETIGDAYMVVSGAPVKE 485


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 60  IEIPTTKKYFFDGDDDML 113
           IEIP   KYF++ D+ ML
Sbjct: 531 IEIPEDLKYFYEIDNWML 548


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 60  IEIPTTKKYFFDGDDDML 113
           IEIP   KYF++ D+ ML
Sbjct: 531 IEIPEDLKYFYEIDNWML 548


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 17  HGPQXQTKYKNYAYNRNTYN*EILF*W***YAMINISQ 130
           H    +  Y N  YN N YN ++       Y +INI Q
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLY------YNIINIEQ 121


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 17  HGPQXQTKYKNYAYNRNTYN*EILF*W***YAMINISQ 130
           H    +  Y N  YN N YN ++       Y +INI Q
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLY------YNIINIEQ 121


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 781 RKNCKVVVVNRMIEQNTDYRFNI 713
           R NC +  +NR++++ T  +F I
Sbjct: 477 RCNCDIDCINRVVQRGTKMQFCI 499


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 445 SDGQVEECLKNALLKDKIVSAECSREIAKLIEQTEV 338
           SD  ++E +K+ L       + CS E+A L E   V
Sbjct: 478 SDVTLDEAVKSPLGSVSSTESTCSGEVASLTEYHHV 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,059
Number of Sequences: 438
Number of extensions: 5172
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)