Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15n23
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       71   1e-14
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.86 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.86 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.86 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 70.9 bits (166), Expect = 1e-14
 Identities = 29/89 (32%), Positives = 55/89 (61%)
 Frame = -3

Query: 794 DTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLI 615
           D+ ++   ++F   ++K D++   +   ++  +++HGD  QR+RE  +  F++G   +L+
Sbjct: 447 DSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILV 506

Query: 614 TTDLLARGIDVQQVSCVINYDLPSNRENY 528
            T + ARG+D++ VS VINYDLP   + Y
Sbjct: 507 ATAVAARGLDIKNVSHVINYDLPKGIDEY 535


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 416 SIVEMPSDVANLI*GAYIFPIYILCPAFYCDI 321
           +I+ MP +VA L+ G +IF I++      CD+
Sbjct: 86  AILVMPFNVAYLLLGKWIFGIHLCKLWLTCDV 117


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 416 SIVEMPSDVANLI*GAYIFPIYILCPAFYCDI 321
           +I+ MP +VA L+ G +IF I++      CD+
Sbjct: 86  AILVMPFNVAYLLLGKWIFGIHLCKLWLTCDV 117


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 416 SIVEMPSDVANLI*GAYIFPIYILCPAFYCDI 321
           +I+ MP +VA L+ G +IF I++      CD+
Sbjct: 86  AILVMPFNVAYLLLGKWIFGIHLCKLWLTCDV 117


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 712 RRCIDSVSQSTLRRVLQKITACAIDSVSY 798
           R+C+D+          QK + C ID V +
Sbjct: 99  RQCVDNAKNEDKCLTAQKFSRCVIDYVKF 127


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 308 HTPYKYRNRTQDTEYKSEKCRRLR 379
           H PY+ + + Q  + + ++ RRLR
Sbjct: 160 HRPYQQQQQQQQRQQQRQEERRLR 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,172
Number of Sequences: 438
Number of extensions: 5400
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)