Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15n02
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    28   2.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    27   3.6  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   3.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   3.6  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   8.3  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   8.3  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 888 ENYLRDNHSNQSYRTKHRRKSNNFNFESEVLKQASLKLEE 769
           E YL+   S + +     +   N+NFE E+ K+ S+ + E
Sbjct: 175 EEYLKGTVSAEKHEILFSKFGINYNFEPEIYKKGSIWIRE 214


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 356 WQWGDFSIQSSQLGFDLCSSNNWFR*RPTY--CIYGLGNSNICTTGQIAWRYWTTIDNR 186
           W WG+ +   S+L FD+ S       RP +   I  + N+N+    ++A  + TT D +
Sbjct: 106 WNWGEANFLGSELVFDVNS-------RPAFEIPISAVTNTNLSGKNEVALEFSTTDDKQ 157


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 849 RTKHRRKSNNFNFESEVLKQASLKLEEYLKEREDDVGKAK 730
           RT + +K      E EVL  AS   E  ++++ED+V + +
Sbjct: 536 RTYYSQKEQEEEIEQEVLFDASSDTELAIQKKEDEVNEVR 575


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/66 (21%), Positives = 31/66 (46%)
 Frame = -2

Query: 888 ENYLRDNHSNQSYRTKHRRKSNNFNFESEVLKQASLKLEEYLKEREDDVGKAKIIVTPPP 709
           ++++R   S   Y+   RR +   N  S+  +++  +    L+ER   +  +  +  PP 
Sbjct: 106 DSFIRSVRSKPKYKPGTRRSTRLRNRRSQDEEESEEEHRPILRERTSRINYSVPLAFPPV 165

Query: 708 DNNNGE 691
           D  +G+
Sbjct: 166 DEMDGD 171


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -1

Query: 331 SQASWVLTSVAVIIGFGKGLRTVFMALVIPTYVPLDKLPGATGLQLITAGVVYLALGPVV 152
           S++ W L +   I G G G     +++++   VPL +     G+  +   +     GPV 
Sbjct: 174 SRSLWQLVAARAIAGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPVG 233

Query: 151 GWIKD 137
           G+  D
Sbjct: 234 GYFAD 238


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 456 LAATDISMRFCTPFVAGKIGWENNTFFL 373
           L A D+ + F +P +  + GW +N F L
Sbjct: 119 LLAIDVLVVFLSPILRHREGWRSNAFVL 146


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 277 LYRNQL-LLLQRSKPSWLDCMLKSPHCHRHNANKEEGV 387
           ++R ++ +L Q + P W+D ++K         NK+E V
Sbjct: 584 VFRKKIEMLRQEAGPEWVDALMKESVVKHKFRNKDESV 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,115
Number of Sequences: 5004
Number of extensions: 70827
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)