Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15n02
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.70 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   8.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   8.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 302 SSNNWFR*RPTYCIYGLGNSNICTTGQIAWRYWTTID 192
           S  NW    P        NS + T  ++ WRYW  +D
Sbjct: 544 SHGNWIY--PASMTIPGSNSAVFTNYKLYWRYWQGVD 578


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 852 YRTKHRRKSNNFNFESEVLKQASLKLEEYLKEREDDVG 739
           Y  + R   ++  FE+ V+KQ    + E  ++R +D G
Sbjct: 26  YPARRRSLVDDARFETLVVKQTKQSVLEEARQRANDAG 63


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 386 LFSHPILPATNGVQNLMEISVAASNDIKKAISL 484
           L S+ ILP  NG+   + ++   +N I   + L
Sbjct: 46  LISNDILPVCNGLWRWIRLTYGQTNHISLTLDL 78


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 386 LFSHPILPATNGVQNLMEISVAASNDIKKAISL 484
           L S+ ILP  NG+   + ++   +N I   + L
Sbjct: 84  LISNDILPVCNGLWRWIRLTYGQTNHISLTLDL 116


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 155 CRLDQRQRLNCRY 117
           C +D+RQR  C+Y
Sbjct: 152 CIIDKRQRNRCQY 164


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 155 CRLDQRQRLNCRY 117
           C +D+RQR  C+Y
Sbjct: 152 CIIDKRQRNRCQY 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,670
Number of Sequences: 438
Number of extensions: 5643
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)