Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15m18
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 153 2e-38
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 150 1e-37
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 33 0.024
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.90
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 3.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.6
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 3.6
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.3
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.3
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 8.4
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 8.4
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 8.4
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 153 bits (370), Expect = 2e-38
Identities = 67/134 (50%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 45
+I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 44 RYKSGKNKWFFQKL 3
+Y+SGK+ WFF L
Sbjct: 121 KYQSGKSAWFFTPL 134
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 150 bits (364), Expect = 1e-37
Identities = 65/134 (48%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 45
+I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 44 RYKSGKNKWFFQKL 3
+Y++GK+ WFF L
Sbjct: 121 KYQTGKSAWFFTPL 134
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 33.1 bits (72), Expect = 0.024
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1
Query: 419 KRTNPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 306
K P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 41 KAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.90
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 227 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 93
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 392 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 309
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 292 LSEVPSS*FLTTIALRPAYRPLKTSTTLPG 381
L E+P + F T+ AY P S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 198 LGPLVDFILSHPLVHFPGVPVDTSDESMPVRLVGGTFV 311
LGP+ + + L HFP DT + S P GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 96 VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 197
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 245 KVHKRMGKNKIHKRSKIKPFVKVV 174
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 140 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 24
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 140 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 42
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 3 KLLEEPLVLPTFVPLFKTYSRVETQLLTFCRVFQVFCAEFFKAEVNCITCWHQVIIVYNL 182
K EEP L L K + + T + + + A FF + +C++ + ++ YN+
Sbjct: 33 KRFEEPS-LEVGGSLAKVENGLSTSISSSASNLEGQQAPFFTKQNSCLSRFRELAQTYNI 91
Query: 183 HE 188
HE
Sbjct: 92 HE 93
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 197 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 60
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 140 LYNVLASSDYSLQPSRKALSWTSCGFY 220
LY L+ S + P R W SC FY
Sbjct: 246 LYRGLSVSMLKVAPGRYECLWLSCHFY 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,875
Number of Sequences: 5004
Number of extensions: 46758
Number of successful extensions: 149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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