Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15m18
(497 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L19527-1|AAA19815.1| 136|Homo sapiens ribosomal protein L27 pro... 202 5e-52
L05094-1|AAC15857.1| 136|Homo sapiens ribosomal protein L27 pro... 202 5e-52
BC098560-1|AAH98560.1| 136|Homo sapiens ribosomal protein L27 p... 202 5e-52
BC010026-1|AAH10026.1| 136|Homo sapiens ribosomal protein L27 p... 202 5e-52
BC007273-1|AAH07273.1| 136|Homo sapiens ribosomal protein L27 p... 202 5e-52
BC002588-1|AAH02588.1| 136|Homo sapiens ribosomal protein L27 p... 202 5e-52
BC001700-1|AAH01700.1| 136|Homo sapiens ribosomal protein L27 p... 202 5e-52
AB061851-1|BAB79492.1| 136|Homo sapiens ribosomal protein L27 p... 202 5e-52
BC021886-1|AAH21886.1| 140|Homo sapiens RPL27 protein protein. 181 1e-45
U25752-1|AAA93226.1| 40|Homo sapiens ribosomal protein L27 pro... 56 7e-08
BX537845-1|CAD97854.1| 1156|Homo sapiens hypothetical protein pr... 30 3.9
BC043404-1|AAH43404.1| 1143|Homo sapiens non-SMC condensin II co... 30 3.9
BC020560-1|AAH20560.1| 935|Homo sapiens NCAPG2 protein protein. 30 3.9
AK023347-1|BAB14534.1| 698|Homo sapiens protein ( Homo sapiens ... 30 3.9
AK022744-1|BAB14219.1| 774|Homo sapiens protein ( Homo sapiens ... 30 3.9
AK000318-1|BAA91081.1| 888|Homo sapiens protein ( Homo sapiens ... 30 3.9
Y18265-1|CAB41400.1| 1324|Homo sapiens zinc finger protein SALL1... 29 6.8
Y18264-1|CAB41399.1| 1324|Homo sapiens zinc finger protein SALL1... 29 6.8
AB065857-1|BAC06075.1| 315|Homo sapiens seven transmembrane hel... 29 6.8
>L19527-1|AAA19815.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 202 bits (493), Expect = 5e-52
Identities = 95/134 (70%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 45
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>L05094-1|AAC15857.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 202 bits (493), Expect = 5e-52
Identities = 95/134 (70%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 45
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC098560-1|AAH98560.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 202 bits (493), Expect = 5e-52
Identities = 95/134 (70%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 45
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC010026-1|AAH10026.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 202 bits (493), Expect = 5e-52
Identities = 95/134 (70%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 45
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC007273-1|AAH07273.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 202 bits (493), Expect = 5e-52
Identities = 95/134 (70%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 45
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC002588-1|AAH02588.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 202 bits (493), Expect = 5e-52
Identities = 95/134 (70%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 45
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC001700-1|AAH01700.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 202 bits (493), Expect = 5e-52
Identities = 95/134 (70%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 45
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>AB061851-1|BAB79492.1| 136|Homo sapiens ribosomal protein L27
protein.
Length = 136
Score = 202 bits (493), Expect = 5e-52
Identities = 95/134 (70%), Positives = 110/134 (82%), Gaps = 2/134 (1%)
Frame = -1
Query: 398 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 219
MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 218 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 45
KI KRSKIK FVKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 44 RYKSGKNKWFFQKL 3
RYK+GKNKWFFQKL
Sbjct: 121 RYKTGKNKWFFQKL 134
>BC021886-1|AAH21886.1| 140|Homo sapiens RPL27 protein protein.
Length = 140
Score = 181 bits (441), Expect = 1e-45
Identities = 85/123 (69%), Positives = 100/123 (81%), Gaps = 2/123 (1%)
Frame = -1
Query: 365 LVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPF 186
LVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV MGK KI KRSKIK F
Sbjct: 16 LVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSF 75
Query: 185 VKVVNYNHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNKWFF 12
VKV NYNHLMPTRY+VD +K KD+ +DPA ++K R +V+FEERYK+GKNKWFF
Sbjct: 76 VKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFF 135
Query: 11 QKL 3
QKL
Sbjct: 136 QKL 138
>U25752-1|AAA93226.1| 40|Homo sapiens ribosomal protein L27
protein.
Length = 40
Score = 56.0 bits (129), Expect = 7e-08
Identities = 24/37 (64%), Positives = 31/37 (83%), Gaps = 1/37 (2%)
Frame = -1
Query: 110 KDL-KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKL 3
KD+ +DPA ++K R +V+FEERYK+GKNKWFFQKL
Sbjct: 2 KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKL 38
>BX537845-1|CAD97854.1| 1156|Homo sapiens hypothetical protein
protein.
Length = 1156
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 300 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 193
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 574 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 609
>BC043404-1|AAH43404.1| 1143|Homo sapiens non-SMC condensin II
complex, subunit G2 protein.
Length = 1143
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 300 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 193
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 574 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 609
>BC020560-1|AAH20560.1| 935|Homo sapiens NCAPG2 protein protein.
Length = 935
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 300 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 193
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 366 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 401
>AK023347-1|BAB14534.1| 698|Homo sapiens protein ( Homo sapiens
cDNA FLJ13285 fis, clone OVARC1001129. ).
Length = 698
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 300 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 193
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 129 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 164
>AK022744-1|BAB14219.1| 774|Homo sapiens protein ( Homo sapiens
cDNA FLJ12682 fis, clone NT2RM4002452. ).
Length = 774
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 300 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 193
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 205 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 240
>AK000318-1|BAA91081.1| 888|Homo sapiens protein ( Homo sapiens
cDNA FLJ20311 fis, clone HEP07319. ).
Length = 888
Score = 30.3 bits (65), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 300 LRQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDK 193
+R + AC +R R+ P + +EDG+E V DK
Sbjct: 366 IRHCLNACIQRAVREPPEDEEEEDGREKENVTVLDK 401
>Y18265-1|CAB41400.1| 1324|Homo sapiens zinc finger protein SALL1
protein.
Length = 1324
Score = 29.5 bits (63), Expect = 6.8
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 259 SIPATKACPYGLSEVPSS*FLTTIALRPAYRPLKTSTTLPGFIILPILEGFVR 417
+IP + PYG+S P + + +P L TS LP LP L F++
Sbjct: 519 NIPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPSLPSLIPFIK 571
>Y18264-1|CAB41399.1| 1324|Homo sapiens zinc finger protein SALL1
protein.
Length = 1324
Score = 29.5 bits (63), Expect = 6.8
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 259 SIPATKACPYGLSEVPSS*FLTTIALRPAYRPLKTSTTLPGFIILPILEGFVR 417
+IP + PYG+S P + + +P L TS LP LP L F++
Sbjct: 519 NIPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPSLPSLIPFIK 571
>AB065857-1|BAC06075.1| 315|Homo sapiens seven transmembrane helix
receptor protein.
Length = 315
Score = 29.5 bits (63), Expect = 6.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 108 FCAEFFKAEVNCITCWHQVIIVYNLHERLYL 200
FCA + A V IT H + I + LHE +YL
Sbjct: 34 FCATYAVAVVGNITLLHVIRIDHTLHEPMYL 64
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,616,611
Number of Sequences: 237096
Number of extensions: 1599661
Number of successful extensions: 7309
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7294
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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