Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15m17
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 30 0.38
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 30 0.50
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.87
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.5
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 28 2.0
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 27 4.7
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 4.7
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 6.1
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.1
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 26 6.1
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 26 6.1
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 8.1
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 30.3 bits (65), Expect = 0.38
Identities = 30/125 (24%), Positives = 53/125 (42%)
Frame = -2
Query: 590 KIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSE 411
KI+ L+C++CN + NR+ + +H LN AD I + + +E
Sbjct: 91 KIKSLQCLFCNNEGLLNRQ---EWFEHSFHVHG-----LNIGLADNIVYINRLLEKIKNE 142
Query: 410 GASFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKHNINMLAKNKYVYY 231
SF C+ C+ + + L H+ + HF P + +Y+ IN + K +
Sbjct: 143 LESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKSSEYDEFYI-----INYASVTKSITI 197
Query: 230 SFGRF 216
S +F
Sbjct: 198 SHSQF 202
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 29.9 bits (64), Expect = 0.50
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = -2
Query: 620 EVDKQFA--ALNKIEDLKCVYCNFDFRDNREAVKHALSNVYHQSAVAETKLNANRADIIS 447
E++ + A + ++ C++C F KH ++ H + E + + +
Sbjct: 192 EIEAELARRSSQRLSPRDCLFCAASFSSFDTCKKHMKAS--HSLYIPEREYLVDEPSLF- 248
Query: 446 VYMKGNYILHSEGASFTCVNCNGVFNSIRSLLMHLVHAEH 327
+Y+ FTC+ CN F S+ ++ H+ H
Sbjct: 249 -----DYLAEKISIGFTCLTCNREFKSLEAVRAHMQQKGH 283
Score = 27.5 bits (58), Expect = 2.7
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Frame = -2
Query: 404 SFTCVNCNGVFNSIRSLLMHLVHAEHF-------AYRPP--AECTFRYYLELKHNINMLA 252
SF C C FN+ S +H H A PP AE L ++ N
Sbjct: 4 SFACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASLPPLSAEVFAGKILSIQKQ-NEEV 62
Query: 251 KNKYVYYSFGRFKCGVCDADIEEGENAKRHVLSPKHRENM 132
+ K +Y C VC+ H+ S KHR+N+
Sbjct: 63 QKKAEFYQ----NCEVCNKKFYSEGAYSSHMASKKHRDNL 98
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.1 bits (62), Expect = 0.87
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Frame = +3
Query: 408 SFAVQDVISLHVNAYDIRSVRVQLRLRDGALVVHI--RKRMFDGLTVIPK-IEVAINAFQ 578
+F Q + S + A + R++ LR + +L ++ + + FD LT + + A + Q
Sbjct: 73 NFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLENQNKRFDALTTENQSLRRANSELQ 132
Query: 579 IFDFIQCRKLFV--DFVVHGQTEKFGYGLHVFVAFEMFDDVRERRHRHVFGANRTNVK 746
I +L + D + Q E G V A + D+ ER+ +H+F ++ + VK
Sbjct: 133 EQSKIASEQLSIAKDQIEALQNENSHLGEQVQSAHQALSDIEERKKQHMFASSSSRVK 190
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = -2
Query: 554 DFRDNREAVKHALSNVYHQSAVAETKLNANRADIISVYMKGNYILHSEGASFTCVNCNGV 375
D N E K + N Y TKL +A + S +GN +L S N NG
Sbjct: 595 DVSKNIERKKETVHNTYRNLMSNRTKLEEMKASLSSSRSRGN-VLESLQRLHESDNLNGF 653
Query: 374 FNSIRSL 354
F + L
Sbjct: 654 FGRLGDL 660
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 325 KCSACTKCIKSDRIELNTP 381
KC+ C +CI+SD + N P
Sbjct: 179 KCNLCYECIESDELRANCP 197
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 578 DLRFYSVPQIVCRLRCSRPDGEVWLRSPCVRCFRNVRRCSRTKA 709
+ + +P + S P GEVW+R P V C + R KA
Sbjct: 471 EFKLVDIPDLGYYTDSSPPRGEVWIRGPAV-CNGYLNRPEDNKA 513
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 619 SLFTARRRSLATVSMC-SLLSKCSTMFANEGTATYSG 726
SLF +R LAT++ C +L+ C FA A +G
Sbjct: 350 SLFIHKRMVLATITTCIALIGSCLLSFAGPPRAQLAG 386
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 348 HQKRPNRIEYAIAIDARKGRSFAVQDVISLHVNA-YDI---RSVRVQLRLRDGALVVHIR 515
H K P + +++R GR VQD + H + +D+ ++ R+ L + V I
Sbjct: 486 HHKNPKCRAKKLVVESRNGRREYVQDAVRRHGDVIWDVLSHKNGRIYLCGSGNSFVSEIE 545
Query: 516 KRMFD 530
K + D
Sbjct: 546 KALMD 550
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 710 VPSFANIVEHFESNEHMETVAK-LLRLAVNNEVDKQFAALNKIEDLKCVYCNFDFRDNRE 534
VPS I+ + + + ET+ K L +L + +V + F K D C Y +F+D E
Sbjct: 206 VPSVYLILRNLDRSLSEETLWKGLSKLEI--DVQRVFMIRYKFNDAFCGYAILEFKDVDE 263
Query: 533 AVK 525
+ K
Sbjct: 264 SAK 266
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 695 NIVEHFESNEHMETVAKLLR 636
N V+H +S++H+E VA L++
Sbjct: 4 NTVKHVDSSKHLEKVASLIK 23
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 690 DVRERRHRHVFGANRTNVKVTERRVVLGGAAVVFVE 797
D+RER R V +N++ VT + +GGA V ++
Sbjct: 574 DMRERLGRMVVASNKSGEPVTADDLGVGGALTVLLK 609
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 275 LIRDNNGRCTPPAVCKQSARRALNASKATESN*IRHCN 388
+IR+NN + P V K A + L A + + I HC+
Sbjct: 607 VIRENNYKGLPLIVVKSFALQGLQALRLLQGQNIIHCD 644
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,541,305
Number of Sequences: 5004
Number of extensions: 73140
Number of successful extensions: 235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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