Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15m09
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    27   3.6  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   8.3  

>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 599 DFKLKKVKKSIKMTFSSNKSSNRNY 673
           +F+ K  K   K+  S NKS NRNY
Sbjct: 116 EFREKDKKDPAKLLVSHNKSPNRNY 140


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 147 VIAIQTNCYFGLIG--FQTKLFITRKYSN*LCVFMYLY 254
           +++++  C F + G  F TK+F +R Y+N L VF  L+
Sbjct: 139 LMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLF 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,883
Number of Sequences: 5004
Number of extensions: 59350
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)