Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15m09
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.8  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 125 NYVNS*VRDRHSNELLFWLNRFSD 196
           NY N  V D   N L FWL R  D
Sbjct: 195 NYYNPVVLDDMQNVLRFWLRRGFD 218


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 653 KSSNRNYPLMKKHAHAHFRCTSVFNISI 736
           K+ N N+    +H   H R T   N+S+
Sbjct: 116 KNQNNNHYTSHQHLRTHLRGTLTVNVSV 143


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 125 NYVNS*VRDRHSNELLFWLNRFSD 196
           NY N  V D   N L FWL R  D
Sbjct: 195 NYYNPVVLDDMQNVLRFWLRRGFD 218


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 230 TLCLYVLISVFIT--CIYKVHSYVIMY 304
           TLC+ + +S  +T  C+Y    Y+I++
Sbjct: 739 TLCVAISLSATVTLVCLYSPKIYIILF 765


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 230 TLCLYVLISVFIT--CIYKVHSYVIMY 304
           TLC+ + +S  +T  C+Y    Y+I++
Sbjct: 829 TLCVAISLSATVTLVCLYSPKIYIILF 855


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 385 IVYRLC*KFDQFQFNGICLNGYILK 459
           ++ RL   FD    + ICLNG +LK
Sbjct: 279 LLVRLACMFDAQTNSMICLNGQVLK 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,311
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)