Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15m02
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    61   9e-11
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   9.8  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 61.3 bits (142), Expect = 9e-11
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = -2

Query: 412 MAVGXVKSAQGXNDLNQYLAEKSYVSGYTPXQADVQVFEQVGKAP-AANLPHVLRWYNQI 236
           M    + S  G   LN +L +KS++ GY P QAD  VF+ VG AP  A  P+  RWY QI
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 235 ASY 227
           A+Y
Sbjct: 61  ATY 63


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 191 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 301
           G L  S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 361  YLAEKSYVSGYTPXQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 221
            YL++  Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4654 YLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 162 RLPPQQRKXTMTTTLIYLVLVXRXRMQKLNEFE 64
           RLPP+Q K        +L ++ + R Q+LN+ +
Sbjct: 384 RLPPEQLKLIGMLYRKHLQIILQHRQQQLNKIQ 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,288
Number of Sequences: 5004
Number of extensions: 27090
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)