Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15m02
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    53   2e-07
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    48   4e-06
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    46   3e-05
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    33   0.20 

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 23/61 (37%), Positives = 37/61 (60%)
 Frame = -2

Query: 412 MAVGXVKSAQGXNDLNQYLAEKSYVSGYTPXQADVQVFEQVGKAPAANLPHVLRWYNQIA 233
           + +  V S  G   L++YL  +SY+SGY   + D+ VF  +  APAA+  +V RWY+ I+
Sbjct: 22  ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81

Query: 232 S 230
           +
Sbjct: 82  A 82


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = -2

Query: 391 SAQGXNDLNQYLAEKSYVSGYTPXQADVQVFEQVGKAPAANLPHVLRWYNQIAS 230
           +A G   L Q+L+ K+YVSG    + D++VF  V   P A  P+  RWY+ +A+
Sbjct: 10  TADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = -2

Query: 397 VKSAQGXNDLNQYLAEKSYVSGYTPXQADVQVFEQVGKAPAANLPHVLRWYNQI 236
           V S  G   L++YL  +SY+SGY     D+ V+     AP+++  +V RW+  I
Sbjct: 8   VSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
 Frame = -2

Query: 373 DLNQYLAEKSYV--SGYTPXQADVQVFEQV-------GKAPAANLPHVLRWYNQI 236
           +LNQ L++KS +  +G+ P  AD+ VF  +       G+      PHVLRW + I
Sbjct: 78  NLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,888,386
Number of Sequences: 37544
Number of extensions: 197884
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)