Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15m02
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...    67   9e-12
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    30   0.96 
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
 Frame = -2

Query: 406 VGXVKSAQGXNDLNQYLAEKSYVSGYTPXQADVQVFEQVGKAP-AANLPHVLRWYNQIAS 230
           V  VKS  G    N  LAE+++ +G+     D Q+F  +G AP A+  P+V RWY  +AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 229 YTPAERKTWS 200
           YT AERKTW+
Sbjct: 62  YTDAERKTWA 71


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 217 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLXKECIQTRSFSQ 354
           QP CM   + + VV+     PAP Q     + Q  ++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171


>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical protein
            M01F1.7 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 382  GXNDLNQYLAEKSYVSGYTPXQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKT 206
            G  D+ +Y  E+ Y+  Y   + D+Q           N PH L ++N   S  P ++K+
Sbjct: 872  GAVDVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEPLKQKS 930


>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
            protein M01F1.7 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 382  GXNDLNQYLAEKSYVSGYTPXQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKT 206
            G  D+ +Y  E+ Y+  Y   + D+Q           N PH L ++N   S  P ++K+
Sbjct: 872  GAVDVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEPLKQKS 930


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 217 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLXKECIQTRSFSQ 354
           QP CM   + + VV+     PA  Q     + Q  ++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,700,896
Number of Sequences: 27780
Number of extensions: 155090
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)