Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15l17
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   2.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   2.5  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   7.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 235 NIVEWSTYLF 206
           N+  WSTYLF
Sbjct: 431 NLAYWSTYLF 440


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 235 NIVEWSTYLF 206
           N+  WSTYLF
Sbjct: 431 NLAYWSTYLF 440


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 130 WKRFRTIRLEKTF 92
           + RF+T+ LEK F
Sbjct: 15  YTRFQTLELEKEF 27


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 228 LNGVPTYLI 202
           + GVPTYLI
Sbjct: 255 IKGVPTYLI 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,043
Number of Sequences: 438
Number of extensions: 1343
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)