Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15l13
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    26   0.47 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    26   0.47 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.83 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   2.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 383 NCFVISSFSKYKVNRNPVNCFVFDLA 460
           NC VI  FS  K  R P N F+  LA
Sbjct: 75  NCCVIWIFSTSKSLRTPSNMFIVSLA 100


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 383 NCFVISSFSKYKVNRNPVNCFVFDLA 460
           NC VI  FS  K  R P N F+  LA
Sbjct: 75  NCCVIWIFSTSKSLRTPSNMFIVSLA 100


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 408 EKEEITKQLQNSRTEFYNTHYSFYNTYNISIYSYHNK 298
           E+ +  K + +    +  ++Y+ YN YN + Y+ +NK
Sbjct: 307 ERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNK 343


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 408 EKEEITKQLQNSRTEFYNTHYSFYNTYNISIYSYHNKFE 292
           E + I+    N +   YN + + YN YN    +Y+N ++
Sbjct: 311 EPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYK 349


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 357 NTHYSFYNTYNISIYSYHNK 298
           N +YS YN YN +  +Y+ K
Sbjct: 88  NYNYSNYNNYNNNYNNYNKK 107



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 408 EKEEITKQLQNSRTEFYNTHYSFYNTYNISIYSYHNKFE 292
           E + I+    N     YN + + YN YN  +Y   N  E
Sbjct: 78  EPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNINYIE 116


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 588 WSYFFVISTFHITFWYHNIN 647
           W Y  +  T HI  W H  N
Sbjct: 166 WPYDILNCTIHIASWSHGSN 185


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 378 NSRTEFYNTHYSFYNTYNISIYS--YHNKFEIQ*RPL 274
           N     YN +Y+ YN  N + Y   Y+N   I+  P+
Sbjct: 328 NYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIPV 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,187
Number of Sequences: 438
Number of extensions: 4545
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)