Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15l11
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    26   0.47 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 15/86 (17%), Positives = 36/86 (41%)
 Frame = -1

Query: 310 KEKETKLERDARRCLL*NATQASKTNEANGGTSKEVSRALPAQSTRERLNNYCRYSHC*N 131
           +E+E K  ++         T   ++ +       +  + + + S   + +NY  Y++  N
Sbjct: 276 REREQKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNN 335

Query: 130 YFYGLLSFRCFYSIYCLNILQFQLEI 53
             Y   + + +Y  Y +NI Q  + +
Sbjct: 336 NNYNNYNKKLYYKNYIINIEQIPVPV 361


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 280 HLFPVWFLFLFRFLHGSNHCIPC 348
           ++FPV F+ +   LHG   C  C
Sbjct: 6   NIFPVLFVIINVLLHGQVICFVC 28


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 357 SKEARDTVVRTMQEAEKKKKPNWKEM 280
           +++    V  T+Q   K K P WK++
Sbjct: 729 NRQVNSAVKSTIQSLMKLKSPEWKDL 754


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 672 QYRGDGIASRGPALGL 625
           +YRG+G++ +G  +GL
Sbjct: 510 KYRGNGVSLKGETVGL 525


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 122 WFTVFSVFLFYLLFEYSSVST 60
           WF   ++FLF  + E++ V+T
Sbjct: 297 WFLGCTIFLFAAMVEFAFVNT 317


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = -2

Query: 351 EARDTVVRTMQEAEKKKKPNWKEMLEDVYYEMPPRLQKQMKQMEEHLKKYPEHYPLNQH 175
           E R  +V +   A      + +E  E+   +    L+ + ++  EH +K  E+Y  + H
Sbjct: 740 ENRSAIVHSEASANANSSTSSEESREE---KATTSLEAEKREKSEHCEKGKEYYAASFH 795


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 535 WLVVGYGKVSSSLHSIVYRKSVGPVDSER 621
           ++ V Y      +H++VYR    PV  +R
Sbjct: 381 FVCVNYVGRKRPMHNVVYRPGENPVTQKR 409


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 535 WLVVGYGKVSSSLHSIVYRKSVGPVDSER 621
           ++ V Y      +H++VYR    PV  +R
Sbjct: 401 FVCVNYVGRKRPMHNVVYRPGENPVTQKR 429


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 535 WLVVGYGKVSSSLHSIVYRKSVGPVDSER 621
           ++ V Y      +H++VYR    PV  +R
Sbjct: 350 FVCVNYVGRKRPMHNVVYRPGENPVTQKR 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,908
Number of Sequences: 438
Number of extensions: 4562
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)