Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15l08
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   4.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.4  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -2

Query: 799 DEVLQIISERPNICKMLHLPAQSGSTAVLDRMRRGYTREAYLELVDHVKSCIP-AVGLST 623
           D++ + + +RP + K LH     G   V+ +  +    E    L +H   C    +G++ 
Sbjct: 21  DDISKFLKDRPYVQKQLHCILDRGHCDVIGKKIKELLPEV---LNNHCNRCTSRQIGIAN 77

Query: 622 DMI 614
            +I
Sbjct: 78  TLI 80


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 313 CRPRSCRIAARFFLLHPRRALSECCQLQLRSTSDSS 420
           C P +   AA   LL  RR++SEC      STS ++
Sbjct: 156 CGPGAAAAAA---LLSKRRSVSECSLGTASSTSSTA 188


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 523 YSMREKTTAYRRYEDDVPDHVKKERHGRLLEVYRRKSQTLNEAE 392
           Y   +KT      E+D    +  +  G L +VYRR    +NE E
Sbjct: 210 YHNDDKTFLVWCNEEDHLRIISMQMGGDLGQVYRRLVHAVNEIE 253


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 511 EKTTAYRRYEDDVPDHVKKERHGRLLEVYRRKSQTLNEAEVGN 383
           E    +R + D+  +  K++    L E Y     TL   EVG+
Sbjct: 273 ELVKEWRDFVDNYAEENKRDEIVLLTEAYSSLENTLKYYEVGS 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,614
Number of Sequences: 438
Number of extensions: 6356
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)