Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15k18
(609 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69043-1|CAA93157.1| 173|Homo sapiens translocon-associated pro... 121 2e-27
Z68129-2|CAA92215.1| 173|Homo sapiens translocon-associated pro... 121 2e-27
X90583-1|CAA62211.1| 173|Homo sapiens protein ( H.sapiens mRNA ... 121 2e-27
BT007192-1|AAP35856.1| 173|Homo sapiens signal sequence recepto... 121 2e-27
BC003371-1|AAH03371.1| 173|Homo sapiens signal sequence recepto... 121 2e-27
BC006429-1|AAH06429.2| 180|Homo sapiens coiled-coil domain cont... 30 5.5
AK131414-1|BAD18561.1| 493|Homo sapiens protein ( Homo sapiens ... 30 5.5
AK054693-1|BAB70794.1| 180|Homo sapiens protein ( Homo sapiens ... 30 5.5
AC132479-1|AAY24075.1| 180|Homo sapiens unknown protein. 30 5.5
BC110331-1|AAI10332.1| 709|Homo sapiens KIAA1530 protein protein. 29 9.7
AB040963-1|BAA96054.1| 794|Homo sapiens KIAA1530 protein protein. 29 9.7
>Z69043-1|CAA93157.1| 173|Homo sapiens translocon-associated
protein delta subunit precursor protein.
Length = 173
Score = 121 bits (291), Expect = 2e-27
Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Frame = -1
Query: 525 MVTKSFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPE 346
M + + ++ ++ + AE+C P++ SY+T+ DA + T+ +I E +L C N + +
Sbjct: 4 MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62
Query: 345 NYGLYAEVDGKSLTAARIGE-NKYQISWTEEPAKARSGVHQINILDEEGWASLRRARRAD 169
N LYA+V GK R + +YQ+SW+ + A +G +++ DEE ++ LR+A+R +
Sbjct: 63 NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122
Query: 168 PAASVAP-LLAIQLSHPGSYSGPWVNSEILATFISILVAYTALRNKSKILA 19
S+ P L + + H G+++GPWV++E+LA I +++ Y A KS I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>Z68129-2|CAA92215.1| 173|Homo sapiens translocon-associated
protein delta subunit precursor protein.
Length = 173
Score = 121 bits (291), Expect = 2e-27
Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Frame = -1
Query: 525 MVTKSFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPE 346
M + + ++ ++ + AE+C P++ SY+T+ DA + T+ +I E +L C N + +
Sbjct: 4 MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62
Query: 345 NYGLYAEVDGKSLTAARIGE-NKYQISWTEEPAKARSGVHQINILDEEGWASLRRARRAD 169
N LYA+V GK R + +YQ+SW+ + A +G +++ DEE ++ LR+A+R +
Sbjct: 63 NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122
Query: 168 PAASVAP-LLAIQLSHPGSYSGPWVNSEILATFISILVAYTALRNKSKILA 19
S+ P L + + H G+++GPWV++E+LA I +++ Y A KS I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>X90583-1|CAA62211.1| 173|Homo sapiens protein ( H.sapiens mRNA for
rat translocon-associated protein delta homolog. ).
Length = 173
Score = 121 bits (291), Expect = 2e-27
Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Frame = -1
Query: 525 MVTKSFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPE 346
M + + ++ ++ + AE+C P++ SY+T+ DA + T+ +I E +L C N + +
Sbjct: 4 MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62
Query: 345 NYGLYAEVDGKSLTAARIGE-NKYQISWTEEPAKARSGVHQINILDEEGWASLRRARRAD 169
N LYA+V GK R + +YQ+SW+ + A +G +++ DEE ++ LR+A+R +
Sbjct: 63 NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122
Query: 168 PAASVAP-LLAIQLSHPGSYSGPWVNSEILATFISILVAYTALRNKSKILA 19
S+ P L + + H G+++GPWV++E+LA I +++ Y A KS I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>BT007192-1|AAP35856.1| 173|Homo sapiens signal sequence receptor,
delta (translocon-associated protein delta) protein.
Length = 173
Score = 121 bits (291), Expect = 2e-27
Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Frame = -1
Query: 525 MVTKSFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPE 346
M + + ++ ++ + AE+C P++ SY+T+ DA + T+ +I E +L C N + +
Sbjct: 4 MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62
Query: 345 NYGLYAEVDGKSLTAARIGE-NKYQISWTEEPAKARSGVHQINILDEEGWASLRRARRAD 169
N LYA+V GK R + +YQ+SW+ + A +G +++ DEE ++ LR+A+R +
Sbjct: 63 NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122
Query: 168 PAASVAP-LLAIQLSHPGSYSGPWVNSEILATFISILVAYTALRNKSKILA 19
S+ P L + + H G+++GPWV++E+LA I +++ Y A KS I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>BC003371-1|AAH03371.1| 173|Homo sapiens signal sequence receptor,
delta (translocon-associated protein delta) protein.
Length = 173
Score = 121 bits (291), Expect = 2e-27
Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Frame = -1
Query: 525 MVTKSFIYIITIALIGSICAESCQNPKVEASYFTSLDATVVTQIAYITEFTLKCDNTLPE 346
M + + ++ ++ + AE+C P++ SY+T+ DA + T+ +I E +L C N + +
Sbjct: 4 MASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRV-Q 62
Query: 345 NYGLYAEVDGKSLTAARIGE-NKYQISWTEEPAKARSGVHQINILDEEGWASLRRARRAD 169
N LYA+V GK R + +YQ+SW+ + A +G +++ DEE ++ LR+A+R +
Sbjct: 63 NMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNN 122
Query: 168 PAASVAP-LLAIQLSHPGSYSGPWVNSEILATFISILVAYTALRNKSKILA 19
S+ P L + + H G+++GPWV++E+LA I +++ Y A KS I A
Sbjct: 123 EDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>BC006429-1|AAH06429.2| 180|Homo sapiens coiled-coil domain
containing 115 protein.
Length = 180
Score = 30.3 bits (65), Expect = 5.5
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 225 INILDEEGWASLRRARRADPAASVAPL 145
+N EEGW SL +AR A A SV PL
Sbjct: 31 LNARVEEGWLSLAKARYAMGAKSVGPL 57
>AK131414-1|BAD18561.1| 493|Homo sapiens protein ( Homo sapiens
cDNA FLJ16524 fis, clone OCBBF2003327, moderately
similar to ADAM-TS 6 precursor (EC 3.4.24.-). ).
Length = 493
Score = 30.3 bits (65), Expect = 5.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 210 EEGWASLRRARRADPAASVAPLLAIQLSHPGSYSG 106
E G L A A P A+ PLLA+ + PG SG
Sbjct: 39 EPGGRGLHGATAAGPVAAACPLLAVTATAPGQPSG 73
>AK054693-1|BAB70794.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ30131 fis, clone BRACE1000159. ).
Length = 180
Score = 30.3 bits (65), Expect = 5.5
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 225 INILDEEGWASLRRARRADPAASVAPL 145
+N EEGW SL +AR A A SV PL
Sbjct: 31 LNARVEEGWLSLAKARYAMGAKSVGPL 57
>AC132479-1|AAY24075.1| 180|Homo sapiens unknown protein.
Length = 180
Score = 30.3 bits (65), Expect = 5.5
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 225 INILDEEGWASLRRARRADPAASVAPL 145
+N EEGW SL +AR A A SV PL
Sbjct: 31 LNARVEEGWLSLAKARYAMGAKSVGPL 57
>BC110331-1|AAI10332.1| 709|Homo sapiens KIAA1530 protein protein.
Length = 709
Score = 29.5 bits (63), Expect = 9.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 374 RLNVTILCPRTTVCTLKSMENH*RPPESVKTNIRFPGPKNQRRLAPECTR 225
R++ + P + L+ + +H PP S + P P+ ++LA E R
Sbjct: 449 RMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQKLAAERAR 498
>AB040963-1|BAA96054.1| 794|Homo sapiens KIAA1530 protein protein.
Length = 794
Score = 29.5 bits (63), Expect = 9.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 374 RLNVTILCPRTTVCTLKSMENH*RPPESVKTNIRFPGPKNQRRLAPECTR 225
R++ + P + L+ + +H PP S + P P+ ++LA E R
Sbjct: 534 RMDEEVSDPTSAAAQLRQLRDHLPPPSSASPSRALPEPQEAQKLAAERAR 583
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,549,479
Number of Sequences: 237096
Number of extensions: 1556745
Number of successful extensions: 4482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4472
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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