Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15k09
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    66   6e-12
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   4.2  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   5.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   7.3  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   7.3  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    26   7.3  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   9.6  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 10/167 (5%)
 Frame = -1

Query: 805 ECNGLTGTSDDSSFDKQRIIGLCIWVCSVLYSSIRTASASSKITMSEHILAKEGSTGQGG 626
           +CN   G S   + +  ++IG      ++LYS++R AS+        ++ A     G   
Sbjct: 290 QCNPW-GNSASGTREFSKVIGAAFTFFTILYSAVRAASSRESDDSYSYLYADSHDMGVST 348

Query: 625 LIXXXXXXXXXXXXXXXXEPKVFDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNS 446
            +                     + +     Y++ +FHI+F LA  Y    LTNW N  S
Sbjct: 349 PLEDGSS----------------EEDKHQSDYNFIWFHIVFVLAAFYTASLLTNW-NTTS 391

Query: 445 QLANE----------NIASMWVKITSSWMCIGLYIWTLVAPAIFPDR 335
              N+          + A++WVKI +SW+C GLY+W+ +AP  FP R
Sbjct: 392 VYENQKNDVFVRIGFSYAAVWVKIITSWVCHGLYVWSCLAPVFFPYR 438


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -1

Query: 520 FFHIMFALATLYVMMTLTNWFNPNSQLANENIASMWVKITSSWMCIGLYIWTLVAPAIFP 341
           F  I F+L  L  +       +  + LAN    + + ++  + MC+   +W LV  A F 
Sbjct: 610 FTFIYFSLVPLNNLFHRAYKSSSRTHLANRYFTADYARLQINDMCVSWGLWLLVFGAKFT 669

Query: 340 DREF 329
           +  F
Sbjct: 670 ESYF 673


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 728 VQRSVLKHKDRLRLVQDNNVRTHSGQRRI 642
           +  +VLKH+ R +L   NNV    GQ+ +
Sbjct: 373 ISLTVLKHEIRTKLYNSNNVFLDKGQKGV 401


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 121 NINNMNLPYFISTLVIIVKRPYAFLENIVKKSFY 20
           +I    + YF     I+V R Y F ENIVK + Y
Sbjct: 845 SIGRFTIMYFDGQKFIVVAR-YLFGENIVKAALY 877


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 347 FSGQGIQLNHKSNNVEFDG 291
           +S + +QLNH++ NVE+ G
Sbjct: 304 YSPENLQLNHEAQNVEYLG 322


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 487 YVMMTLTNWFNPNSQLANENIASMWVKITSSWM 389
           ++  T  NWF  N    N  I S+   + S+WM
Sbjct: 53  WLQYTNPNWFKRNFSSGNYEINSLQSLLLSAWM 85


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 729 TQMHSPIIRCLSKDESSDVP 788
           TQ+H P+ R LS  E + VP
Sbjct: 34  TQLHKPLTRNLSNKEDTHVP 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,337
Number of Sequences: 5004
Number of extensions: 62165
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)