Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15k04
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   268   7e-73
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   219   4e-58
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    33   0.051
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   2.5  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    27   3.4  

>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  268 bits (657), Expect = 7e-73
 Identities = 124/206 (60%), Positives = 169/206 (82%), Gaps = 1/206 (0%)
 Frame = -3

Query: 803 PWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERV 624
           PW+Q+ I++D+R+RPRN+ T TGSKDLQ V++TLR+L RP    LP+IY  LG+DYDERV
Sbjct: 58  PWLQKAIVYDVRTRPRNIATTTGSKDLQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERV 117

Query: 623 LPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKE 444
           LPSI +E+LK+VVAQFDA ELITQRE+VS K+   L +RA +FG+ L+D+SITH+TFGKE
Sbjct: 118 LPSIGNEILKSVVAQFDAAELITQREVVSAKIRQELVQRATEFGIRLEDVSITHMTFGKE 177

Query: 443 FTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVEL 264
           FT+AVE KQ+AQQEAE+ARFLVE++EQ+++A VI AEG+A+AA +++K+   AG  L+++
Sbjct: 178 FTKAVERKQIAQQEAERARFLVEQSEQERQANVIRAEGEAEAADIVSKALDKAGGALIQI 237

Query: 263 RRIEAAEDIAYQLA-KSRNVTYLPHG 189
           RR+E ++++A  LA K   VTYLP G
Sbjct: 238 RRLETSKEVATALANKGAQVTYLPFG 263


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  219 bits (535), Expect = 4e-58
 Identities = 103/202 (50%), Positives = 151/202 (74%)
 Frame = -3

Query: 803 PWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERV 624
           PW++  I +D+R++PRN+ ++TG+KDLQ VNI  R+L RP    LP+IY  LG DYDERV
Sbjct: 68  PWIETAIDYDVRAKPRNISSLTGTKDLQMVNINCRVLSRPDVHALPKIYRTLGGDYDERV 127

Query: 623 LPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKE 444
           LPSI +EVLK+VVAQF+A +LITQRE VS+ V ++L +RAA+F ++LDD+S+TH+ F  E
Sbjct: 128 LPSIVNEVLKSVVAQFNASQLITQRERVSRLVRENLMKRAARFNILLDDVSLTHVQFSPE 187

Query: 443 FTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVEL 264
           FT AVE KQ+AQQ+A++A F V++A  +K+  ++ A+G+ +AA L+ ++  +   G +EL
Sbjct: 188 FTAAVEAKQIAQQDAQRATFYVDRARMEKQGFIVRAQGEGRAAQLIGEAIKNK-PGFIEL 246

Query: 263 RRIEAAEDIAYQLAKSRNVTYL 198
           R++E A +IA  L+KS N   L
Sbjct: 247 RKLETAREIANILSKSNNKVML 268


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 1/162 (0%)
 Frame = -3

Query: 782 IFDIRSRPRNVPTITGSKDLQNVNITLR-ILFRPVPDQLPRIYTILGIDYDERVLPSITS 606
           I  ++ R   +PT   +  L NV++ L  +L+  V D     Y +   DY    +  +  
Sbjct: 91  IHSLKERALEIPT-QSAITLDNVSLGLDGVLYIQVYDPYKASYGVEDADY---AISQLAQ 146

Query: 605 EVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVE 426
             +++ + +     ++ +R+ ++  + D++ + A  +G+      I  +   +    A+ 
Sbjct: 147 TTMRSEIGRLTLDHVLRERQSLNIHITDAINKAAESWGIRCLRHEIRDIRPPESVVMAMH 206

Query: 425 LKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAK 300
            +QV+             AE+QK+A ++ +EG  QAA+ +A+
Sbjct: 207 -QQVS-------------AERQKRAEILESEGKRQAAINVAE 234


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 380 VEKAEQQKKAAVIAAEGDAQAAVLLA 303
           +E+ E+QK AA  AAE +AQ A   A
Sbjct: 213 IEREEEQKAAAAAAAEEEAQLAAQTA 238


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 380 VEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAG-EGLVELRRIEAAED 240
           +  +E+  + A I+A GD     LLAK+    G EG++ ++      D
Sbjct: 169 ITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISD 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,455
Number of Sequences: 5004
Number of extensions: 56983
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)