Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15k04
(850 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 24 1.5
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 24 1.5
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 24 1.5
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 24 1.5
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 24 1.5
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 24 1.5
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 24 1.5
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 24 1.5
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 1.5
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 24 1.5
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 24 1.5
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 24 1.5
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 1.5
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 3.6
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 3.6
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 3.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 3.6
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 8.2
AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein. 22 8.2
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 24.2 bits (50), Expect = 1.5
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.0 bits (47), Expect = 3.6
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ +++E ++R E+ + +++A +I E + + L K ELRR
Sbjct: 14 KFKQLRNEDSEIDLRSRTKEERLQHRREAWLIQQEREREHQRLTKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 23.0 bits (47), Expect = 3.6
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -3
Query: 428 ELKQVAQQEAE---KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 258
+ KQ+ ++ E ++R E+ + +++A +I E + + L+ K ELRR
Sbjct: 14 KFKQLRNEDNEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRR 68
Query: 257 IEAAEDIAYQLAKSRN 210
I E + + +KSR+
Sbjct: 69 IREIEKLGSERSKSRS 84
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 218 SRNVTYLPHGQNVLLNLPTQN 156
+RN+ LP G+ +L NL +Q+
Sbjct: 1358 TRNIQILPSGELMLSNLQSQD 1378
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 218 SRNVTYLPHGQNVLLNLPTQN 156
+RN+ LP G+ +L NL +Q+
Sbjct: 1354 TRNIQILPSGELMLSNLQSQD 1374
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.8 bits (44), Expect = 8.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -3
Query: 395 KARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKS 216
++R E+ + +++A +I E + + L+ K ELRRI E + + +KS
Sbjct: 28 RSRTKEERLQHRREAWLIQQEREREHQRLMKKMILE-----YELRRIREIEKLGSERSKS 82
Query: 215 RN 210
R+
Sbjct: 83 RS 84
>AB194707-1|BAD69622.1| 247|Apis mellifera heme oxygenase protein.
Length = 247
Score = 21.8 bits (44), Expect = 8.2
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -3
Query: 530 VNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEK 372
++DSL FG + + + L E + +EL + ++ E FL E+
Sbjct: 23 ISDSLVNAKLAFGFLDNSVWADGLLVFYEVFRYLELAMIRWKDTEIGLFLHEE 75
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,610
Number of Sequences: 438
Number of extensions: 4096
Number of successful extensions: 37
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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