Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15k01
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   4.8  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    26   4.8  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    26   4.8  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    26   4.8  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    26   6.4  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   8.5  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   8.5  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   8.5  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 190 VAIPRKIKFFNIVTIYQYIFEFSFRNPLKWLKKNVFLFHMSSVVLFRFSSINIVTFLL 17
           V I R++K  N+V ++ ++    F + +  L +   LFH   +V F + S N+   ++
Sbjct: 113 VNIMRRVKHKNVVNLFDFVETEDFYHLVMELAEGGELFH--QIVNFTYFSENLARHII 168


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +3

Query: 159 LKNFIFLGIATKNILFGKFQK*FSSITKWQNII--F*KKKIQDESKP**TMWIGVDNLY- 329
           L   +FL    KN L G  QK F  I  W+ ++  + +      S P    W  + NLY 
Sbjct: 38  LSKTLFLDRKGKNKLNGTIQKEFGRIRGWKELVTTYFEYVENAASSPDQRKWELLQNLYS 97

Query: 330 -MYTYYSH 350
            + T +SH
Sbjct: 98  NLTTCFSH 105


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 KVIFFYNKVAKHYFLEEKNSRRI*TIVNY 304
           KV  F NK ++  FL+ KN RR+   V Y
Sbjct: 27  KVFRFVNKKSESLFLQRKNPRRLSWTVLY 55


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 KVIFFYNKVAKHYFLEEKNSRRI*TIVNY 304
           KV  F NK ++  FL+ KN RR+   V Y
Sbjct: 27  KVFRFVNKKSESLFLQRKNPRRLSWTVLY 55


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 118 RNPLKWLKKNVFLFHMSSVVLFRFSSINIVTFLLCH 11
           R+P K  KK   + H SSV+ +  S ++ V+ +L H
Sbjct: 135 RDPSKLSKKETLVAHHSSVLWYLQSELSDVSSVLYH 170


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 196 FFVAIPRKIKFFNIVTIYQYIF-EFSFRNPLKW 101
           F+V   +KIKF  ++T Y+Y+  + S  + +KW
Sbjct: 470 FYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKW 502


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = -2

Query: 484 FCFG-CGIKNTFYKF 443
           FC G CG   TFYKF
Sbjct: 101 FCMGICGFMKTFYKF 115


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 167 FYFSRNSYKKHFIWKVPKVIFFYNKVAKHYFLEEKNSR 280
           FY S  S +K  IW  PK+  F   ++   +L     R
Sbjct: 114 FYSSSESSEKELIWFQPKMRVFLQSLSNMSYLSPSKFR 151


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 596 SNIYWSLHQMQKCKIDVDYVD 658
           S+ Y+   +M++  IDVDYVD
Sbjct: 236 SDSYFYFSKMRRISIDVDYVD 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,593
Number of Sequences: 5004
Number of extensions: 60953
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)