Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15k01
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141...    28   6.7  
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583...    28   8.8  

>04_01_0129 +
           1408408-1409055,1409107-1410013,1410145-1410294,
           1419174-1419634,1419683-1419999,1420114-1420477
          Length = 948

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 109 LKWLKKNVFLFHMSSVVLFRFSSINIVTFLLCHYV 5
           L+ L+ +V    +S  ++FR S  NI+T LLCH V
Sbjct: 603 LEALQNDVVQCLVSFELIFRPSFFNIMTHLLCHLV 637


>02_02_0521 -
           11156594-11156956,11157097-11157483,11158327-11158383,
           11159671-11159970
          Length = 368

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 580 LLLQCFQ-HILVATSNAKVQDRC*LCRHTMC*LDIKCNVL 696
           +LL+C   H L +T   +V +RC  CR  +   DI+C  L
Sbjct: 116 ILLECQNGHTLCSTCKTRVHNRCPTCRQELG--DIRCLAL 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,801
Number of Sequences: 37544
Number of extensions: 287588
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)