Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15j20
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   2.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   2.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.1  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 603 ILKQPVSVTIGKKCL*YLYWQKPV 674
           +L+ P   +IG KCL YL++ K +
Sbjct: 385 LLRLPAIRSIGLKCLEYLFFFKMI 408


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 603 ILKQPVSVTIGKKCL*YLYWQKPV 674
           +L+ P   +IG KCL YL++ K +
Sbjct: 385 LLRLPAIRSIGLKCLEYLFFFKMI 408


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 719 CKSLSRCVGQEETHEAASGEQHGPNERRRR 808
           CK +   +     H++    QH  NE++R+
Sbjct: 38  CKRVYSSLNSLRNHKSIYHRQHSKNEQQRK 67


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 317 VENFKINLYLNLK 355
           VENFK  +YL LK
Sbjct: 478 VENFKGGMYLRLK 490


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 317 VENFKINLYLNLK 355
           VENFK  +YL LK
Sbjct: 478 VENFKGGMYLRLK 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,875
Number of Sequences: 438
Number of extensions: 5086
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)