Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15j12
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   0.54 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    20   6.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   6.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 0.54
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 319 LWIFHFTLWLWKSGKFQFIFENKSKQEQ*QNER 221
           L +F+ T W +  G+ QF F    KQ+   N R
Sbjct: 172 LSVFNGTGWTFHEGRKQFYFHQFYKQQPDLNYR 204


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 223 AHFVIVLVYFYSQK*IEIFLI 285
           A + ++LVYF+ Q+ +  FLI
Sbjct: 198 AEYSMLLVYFHLQRHMGNFLI 218


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 252 KVNKNNNKMSAWRQAGLTYINYSN 181
           K+  NNN +S        Y NY+N
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNN 103


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 255 IKVNKNNNKMSAWRQAGLTY 196
           + VNK+ NK + W++    Y
Sbjct: 690 VSVNKSWNKWNDWQETQNNY 709


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 255 IKVNKNNNKMSAWRQAGLTY 196
           + VNK+ NK + W++    Y
Sbjct: 690 VSVNKSWNKWNDWQETQNNY 709


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 255 IKVNKNNNKMSAWRQAGLTY 196
           + VNK+ NK + W++    Y
Sbjct: 690 VSVNKSWNKWNDWQETQNNY 709


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 34  IPSSLWNSFLEVCRS 78
           I  SL   FL+VCRS
Sbjct: 334 IRESLDTQFLQVCRS 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,575
Number of Sequences: 438
Number of extensions: 1443
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)