Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15j08
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   2.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 848 VV*LATS*SQPYWTRTVRRRRSLWPCCSPEAASCVSSCPTQRDKLYNN 705
           +V  +T+ S+ +  R      +L  CC  +A  C  +CP    K YN+
Sbjct: 724 IVSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPA-GCKCYND 770


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 594 ILKQPVSVTIGKKCL*YLYWQKPV 665
           +L+ P   +IG KCL YL++ K +
Sbjct: 385 LLRLPAIRSIGLKCLEYLFFFKMI 408


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 594 ILKQPVSVTIGKKCL*YLYWQKPV 665
           +L+ P   +IG KCL YL++ K +
Sbjct: 385 LLRLPAIRSIGLKCLEYLFFFKMI 408


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 308 VENFKINLYLNLK 346
           VENFK  +YL LK
Sbjct: 478 VENFKGGMYLRLK 490


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 308 VENFKINLYLNLK 346
           VENFK  +YL LK
Sbjct: 478 VENFKGGMYLRLK 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,246
Number of Sequences: 438
Number of extensions: 5802
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)