Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15j06
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   2.0  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   3.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 521 DAELRFVKFEFHSHWKTLINKKEKLHLIFMN 613
           D++   V  + H+HW TL  K  K+   F N
Sbjct: 499 DSKTGGVNLKGHAHWLTLHFKDPKVESAFHN 529


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 333 ILASIFWSYQGV---ELRSENLVA*IRLIFSIYYLQLL 229
           +L S++W Y+G+   EL S N     R I S+ Y++ L
Sbjct: 66  VLLSVWWDYKGIVYFELLSPN-----RTINSVVYIEQL 98


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 243 YLQLLHMCCMGQ-VRQHKTGGNCLRSSCYC 157
           +L + H  C  + + Q + GG+C    C C
Sbjct: 73  WLSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 598 M*FFLLIYKGLPVTVKFKFYKSQLCIRWKFDK 503
           M F L +Y   PV+ ++  Y S++   +KFDK
Sbjct: 614 MPFQLFLYVS-PVSSEYNQYNSRIWGGYKFDK 644


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 598 M*FFLLIYKGLPVTVKFKFYKSQLCIRWKFDK 503
           M F L +Y   PV+ ++  Y S++   +KFDK
Sbjct: 614 MPFQLFLYVS-PVSSEYNQYNSRIWGGYKFDK 644


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 434 NLYSLHVCEMIFMVLNQYYKIA 499
           N+Y     E I++V N+Y KIA
Sbjct: 363 NIYERQNNEYIWIVSNKYQKIA 384


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 333 ILASIFWSYQGVELRSENLVA*IRLIFSIYYLQLL 229
           +L S++W Y+G+      L+   R I S+ Y++ L
Sbjct: 188 VLLSVWWDYKGIVY--FELLPPNRTINSVVYIEQL 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,589
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)