Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15j02
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 75 7e-15
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.2
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 26 4.2
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 4.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 5.5
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 25 9.7
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 9.7
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 9.7
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 25 9.7
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 9.7
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 25 9.7
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 75.4 bits (177), Expect = 7e-15
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Frame = -3
Query: 438 KIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXK 259
+I ++V +I++L+LLE SEL + LK++LN+ + +
Sbjct: 76 QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEE 135
Query: 258 -TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKE 82
T++ +K+ FD K +IKEVK LL G +LV AKKFVES P V+K +I K++AE +K
Sbjct: 136 KTTWNLKLESFDAGSKAKVIKEVKSLL-GLSLVDAKKFVESAPKVLKENILKEDAEAIKS 194
Query: 81 ALTKVGAIIEIE 46
L K+ + +E
Sbjct: 195 KLEKLSCKVVLE 206
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 280 LFFINSSRWSHC-ESAHWHNWSVGQVQS 360
LFF NSSR+S C ES W +S G V S
Sbjct: 136 LFFSNSSRFSACEESGEWVIYS-GDVYS 162
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 4.2
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = -3
Query: 636 SQTNIILFENLSKNKTRNMNGIRIIKNVNLQWRSLSRCSVLRQEVTQTVTPLTIPVPEGV 457
S+T I F S NKTR +NG + + L CS E+ P+ P G
Sbjct: 64 SETLAIAFYLASLNKTRALNGTTAEEKAKV----LQYCSFTNSELPGAFRPIIAPRVFGA 119
Query: 456 --DKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD 343
D+ + + E + I E++ + ++ RL L D
Sbjct: 120 PYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLAD 159
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 183 LEGFNLVQAKKFVESVPTVVKADISKD 103
++GF + + KK + +PTV AD KD
Sbjct: 533 IDGFFVAKLKKISDKIPTVNVADDMKD 559
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 222 KQKVALIKEVKGLLEGFNL--VQAKKFVESVPTV 127
KQ VA IKE+ LLE F + + F + +PT+
Sbjct: 142 KQAVASIKELNSLLENFGIPALSPIPFYKLIPTL 175
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 516 LRQEVTQTVTPLTIP--VPEGVDKPVSPKIEKIVFE 415
LR+ T T P VPE DKP K++ VFE
Sbjct: 25 LRRVTTDATTSRANPAHVPEEHDKPFPVKLDDSVFE 60
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 650 KYLHTVKLILFCLRI 606
+YL + KL++FCLRI
Sbjct: 131 QYLQSSKLLIFCLRI 145
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 456 DKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLN 352
++ +S KI ++ E+ N LLE+ E L +R+N
Sbjct: 601 EEKLSGKITGMLLEMPNSELLELLEDDSALNERVN 635
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 207 LIKE-VKGLLEGFNLVQAKKFVES 139
LI+E V G LEG N+V+AKK + +
Sbjct: 79 LIRERVYGDLEGMNVVEAKKLLNA 102
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 252 FTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEAL 76
F+ + + DD + VA E L KF+ SVP + D ++ KL+E +
Sbjct: 315 FSFRTLRRDDDECVAQTIENSALFSDIK-PNPTKFLSSVPELTADDTAESYLSKLRETV 372
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 229 KFRHFNCKTGLHSFRGCLFFINSSRWSHCE 318
KF +TG H G L ++ SS W+ E
Sbjct: 531 KFLKMGLETGWHGKFGSLNYVTSSTWARQE 560
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,861
Number of Sequences: 5004
Number of extensions: 41134
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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