Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15j01
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   8.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.0  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 259 TNMRPTVAGATSSSITISRSHL 324
           T   PT   +T++S TIS+ H+
Sbjct: 382 TTASPTTEPSTTTSTTISQKHI 403


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 187 YSNYNKLHSTRIYNLNNHGGINSR 116
           YSNYN  ++   YN NN+   N +
Sbjct: 324 YSNYNNYNN---YNNNNYNNYNKK 344


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 428 YCQLGKCISIG 396
           YC+L KCI++G
Sbjct: 73  YCRLKKCIAVG 83


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 428 YCQLGKCISIG 396
           YC+L KCI++G
Sbjct: 122 YCRLKKCIAVG 132


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 411 MYQYWNNPKHPTALHQESPILQSSSPN 331
           +YQ  ++  H   L+Q+SP L   +P+
Sbjct: 69  IYQSHHHLHHHQVLYQQSPYLMYENPD 95


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 542 YAAFSLHNVSLVNT 583
           Y+A S HN++ VNT
Sbjct: 264 YSAMSSHNLNYVNT 277


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 542 YAAFSLHNVSLVNT 583
           Y+A S HN++ VNT
Sbjct: 265 YSALSSHNLNYVNT 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,143
Number of Sequences: 438
Number of extensions: 5585
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)