Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15i19
(840 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein. 34 0.56
BC111572-1|AAI11573.1| 279|Homo sapiens BARX homeobox 2 protein. 33 1.3
BC111432-1|AAI11433.1| 279|Homo sapiens BARX homeobox 2 protein. 33 1.3
BC069378-1|AAH69378.1| 279|Homo sapiens BARX homeobox 2 protein. 33 1.3
AJ243512-1|CAB50736.1| 279|Homo sapiens Barx2 protein protein. 33 1.3
AF171222-1|AAF09453.1| 254|Homo sapiens BARX2 protein. 33 1.3
AF031924-1|AAC04705.1| 254|Homo sapiens barx2 protein. 33 1.3
U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel... 33 1.7
U18945-1|AAA91633.1| 299|Homo sapiens cyclic nucleotide gated c... 33 1.7
AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor CNG-c... 33 1.7
BC039825-1|AAH39825.1| 457|Homo sapiens MAK protein protein. 32 2.3
AL024498-4|CAB75823.1| 623|Homo sapiens protein ( ovel serine/t... 32 2.3
AF505623-1|AAN16405.1| 623|Homo sapiens male germ cell-associat... 32 2.3
U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein. 31 5.2
D80003-1|BAA11498.2| 2079|Homo sapiens KIAA0181 protein. 31 5.2
D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein. 31 5.2
D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein. 31 5.2
BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein. 31 5.2
AF245115-1|AAF78480.1| 2063|Homo sapiens nuclear receptor coacti... 31 5.2
AF177388-1|AAF13595.1| 2063|Homo sapiens cancer-amplified transc... 31 5.2
AF171667-1|AAF71829.1| 2063|Homo sapiens thyroid hormone recepto... 31 5.2
AF128458-1|AAF37003.1| 2063|Homo sapiens nuclear receptor coacti... 31 5.2
D29956-1|BAA06225.2| 1120|Homo sapiens KIAA0055 protein. 31 6.9
BX537420-1|CAD97662.1| 1118|Homo sapiens hypothetical protein pr... 31 6.9
BC110590-1|AAI10591.1| 1118|Homo sapiens ubiquitin specific pept... 31 6.9
BC051345-1|AAH51345.1| 480|Homo sapiens USP8 protein protein. 31 6.9
BC038801-1|AAH38801.1| 478|Homo sapiens USP8 protein protein. 31 6.9
BC026954-1|AAH26954.1| 481|Homo sapiens USP8 protein protein. 31 6.9
BC015545-1|AAH15545.1| 483|Homo sapiens Unknown (protein for IM... 31 6.9
BC113380-1|AAI13381.1| 1147|Homo sapiens KIAA1429 protein. 30 9.1
BC112288-1|AAI12289.1| 1147|Homo sapiens hypothetical protein LO... 30 9.1
AL109824-4|CAB92721.2| 2063|Homo sapiens nuclear receptor coacti... 30 9.1
AF208227-1|AAF16403.1| 2001|Homo sapiens transcriptional coactiv... 30 9.1
AB037850-1|BAA92667.1| 1795|Homo sapiens KIAA1429 protein protein. 30 9.1
>U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein.
Length = 1184
Score = 34.3 bits (75), Expect = 0.56
Identities = 31/112 (27%), Positives = 47/112 (41%)
Frame = -2
Query: 776 STSDGATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDE 597
S+SDG + R +K + + + G SE E+ + + +T P+ T +E
Sbjct: 41 SSSDGKAEKSRQTAKKARVEEASTPKVNKQGRSE--EISESESEETNA----PKKTKTEE 94
Query: 596 PSMISDPSDFPTTIKREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 441
PSD + R + DD S D D+DQ T PSI +E D
Sbjct: 95 LPRPQSPSDLDSLDGRSLNDD---GSSDPRDIDQDNRSTSPSIYSPGSVEND 143
>BC111572-1|AAI11573.1| 279|Homo sapiens BARX homeobox 2 protein.
Length = 279
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 761 ATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMI 585
A + +GRP+K+ E+++ + +S+ + EQ + +LC E D P +
Sbjct: 199 APTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEM 258
Query: 584 SDPSDFPTTIKREVTDDLPPP 522
++P D P + + PPP
Sbjct: 259 AEPPDPPQEL--PIPSSEPPP 277
>BC111432-1|AAI11433.1| 279|Homo sapiens BARX homeobox 2 protein.
Length = 279
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 761 ATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMI 585
A + +GRP+K+ E+++ + +S+ + EQ + +LC E D P +
Sbjct: 199 APTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEM 258
Query: 584 SDPSDFPTTIKREVTDDLPPP 522
++P D P + + PPP
Sbjct: 259 AEPPDPPQEL--PIPSSEPPP 277
>BC069378-1|AAH69378.1| 279|Homo sapiens BARX homeobox 2 protein.
Length = 279
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 761 ATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMI 585
A + +GRP+K+ E+++ + +S+ + EQ + +LC E D P +
Sbjct: 199 APTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEM 258
Query: 584 SDPSDFPTTIKREVTDDLPPP 522
++P D P + + PPP
Sbjct: 259 AEPPDPPQEL--PIPSSEPPP 277
>AJ243512-1|CAB50736.1| 279|Homo sapiens Barx2 protein protein.
Length = 279
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 761 ATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMI 585
A + +GRP+K+ E+++ + +S+ + EQ + +LC E D P +
Sbjct: 199 APTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEM 258
Query: 584 SDPSDFPTTIKREVTDDLPPP 522
++P D P + + PPP
Sbjct: 259 AEPPDPPQEL--PIPSSEPPP 277
>AF171222-1|AAF09453.1| 254|Homo sapiens BARX2 protein.
Length = 254
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 761 ATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMI 585
A + +GRP+K+ E+++ + +S+ + EQ + +LC E D P +
Sbjct: 174 APTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEM 233
Query: 584 SDPSDFPTTIKREVTDDLPPP 522
++P D P + + PPP
Sbjct: 234 AEPPDPPQEL--PIPSSEPPP 252
>AF031924-1|AAC04705.1| 254|Homo sapiens barx2 protein.
Length = 254
Score = 33.1 bits (72), Expect = 1.3
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 761 ATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMI 585
A + +GRP+K+ E+++ + +S+ + EQ + +LC E D P +
Sbjct: 174 APTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQEQLEPSQGQEELCEAQEPKARDVPLEM 233
Query: 584 SDPSDFPTTIKREVTDDLPPP 522
++P D P + + PPP
Sbjct: 234 AEPPDPPQEL--PIPSSEPPP 252
>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel
beta subunit protein.
Length = 1251
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+ G PRK + EE+++ +E+E + +T + PE++ +E ++DP
Sbjct: 10 PQPPGTPRKTKMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADP 69
Query: 575 S 573
S
Sbjct: 70 S 70
>U18945-1|AAA91633.1| 299|Homo sapiens cyclic nucleotide gated
channel gamma subunit protein.
Length = 299
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+ G PRK + EE+++ +E+E + +T + PE++ +E ++DP
Sbjct: 10 PQPPGTPRKTKMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADP 69
Query: 575 S 573
S
Sbjct: 70 S 70
>AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor
CNG-channel beta subunit protein.
Length = 1245
Score = 32.7 bits (71), Expect = 1.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+ G PRK + EE+++ +E+E + +T + PE++ +E ++DP
Sbjct: 10 PQPPGTPRKTKMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADP 69
Query: 575 S 573
S
Sbjct: 70 S 70
>BC039825-1|AAH39825.1| 457|Homo sapiens MAK protein protein.
Length = 457
Score = 32.3 bits (70), Expect = 2.3
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -2
Query: 731 KDQNSLEEDLQYSDSGSSELEEVEQKDIVDTI-QLCVKPEDTTLDEPSMISDPSDFPTTI 555
+ + SL + LQ +S S L EVE K + D I Q+ +P+ T +P P P +
Sbjct: 298 ESKQSLNKQLQPLESKPS-LVEVEPKPLPDIIDQVVGQPQPKTSQQPLQPIQP---PQNL 353
Query: 554 KREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 441
+ PP ++P FPSIVK P +P+
Sbjct: 354 SVQ-----QPPKQQ--SQEKPPQTLFPSIVKNMPTKPN 384
>AL024498-4|CAB75823.1| 623|Homo sapiens protein ( ovel
serine/threonine-proteinila) (Deafglial cells missing
homolog 2 (Drosophila)).).
Length = 623
Score = 32.3 bits (70), Expect = 2.3
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -2
Query: 731 KDQNSLEEDLQYSDSGSSELEEVEQKDIVDTI-QLCVKPEDTTLDEPSMISDPSDFPTTI 555
+ + SL + LQ +S S L EVE K + D I Q+ +P+ T +P P P +
Sbjct: 298 ESKQSLNKQLQPLESKPS-LVEVEPKPLPDIIDQVVGQPQPKTSQQPLQPIQP---PQNL 353
Query: 554 KREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 441
+ PP ++P FPSIVK P +P+
Sbjct: 354 SVQ-----QPPKQQ--SQEKPPQTLFPSIVKNMPTKPN 384
>AF505623-1|AAN16405.1| 623|Homo sapiens male germ cell-associated
kinase protein.
Length = 623
Score = 32.3 bits (70), Expect = 2.3
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -2
Query: 731 KDQNSLEEDLQYSDSGSSELEEVEQKDIVDTI-QLCVKPEDTTLDEPSMISDPSDFPTTI 555
+ + SL + LQ +S S L EVE K + D I Q+ +P+ T +P P P +
Sbjct: 298 ESKQSLNKQLQPLESKPS-LVEVEPKPLPDIIDQVVGQPQPKTSQQPLQPIQP---PQNL 353
Query: 554 KREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 441
+ PP ++P FPSIVK P +P+
Sbjct: 354 SVQ-----QPPKQQ--SQEKPPQTLFPSIVKNMPTKPN 384
>U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein.
Length = 1190
Score = 31.1 bits (67), Expect = 5.2
Identities = 30/112 (26%), Positives = 45/112 (40%)
Frame = -2
Query: 776 STSDGATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDE 597
S+SDG + R +K + + + G SE E+ + + +T + L
Sbjct: 41 SSSDGKAEKSRQTAKKARVEEASTPKVNKQGRSE--EISESESEETNAPKKTKTEQELPR 98
Query: 596 PSMISDPSDFPTTIKREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 441
P PSD + R + DD S D D+DQ T PSI +E D
Sbjct: 99 PQ---SPSDLDSLDGRSLNDD---GSSDPRDIDQDNRSTSPSIYSPGSVEND 144
>D80003-1|BAA11498.2| 2079|Homo sapiens KIAA0181 protein.
Length = 2079
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+K+ PRK +NS ++DL D+ + LEE +Q + + + L P + P
Sbjct: 930 PKKKKPPRKKKNS-QQDLNTPDTRPAGLEEADQPPLPGEQGISLDNSGPKL--PEFSNRP 986
Query: 575 SDFPT-TIKREVTDDLPP 525
+P+ +++ +PP
Sbjct: 987 PGYPSQPVEQRPLQQMPP 1004
>D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein.
Length = 1182
Score = 31.1 bits (67), Expect = 5.2
Identities = 30/112 (26%), Positives = 45/112 (40%)
Frame = -2
Query: 776 STSDGATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDE 597
S+SDG + R +K + + + G SE E+ + + +T + L
Sbjct: 41 SSSDGKAEKSRQTAKKARVEEASTPKVNKQGRSE--EISESESEETNAPKKTKTEQELPR 98
Query: 596 PSMISDPSDFPTTIKREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 441
P PSD + R + DD S D D+DQ T PSI +E D
Sbjct: 99 PQ---SPSDLDSLDGRSLNDD---GSSDPRDIDQDNRSTSPSIYSPGSVEND 144
>D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein.
Length = 1185
Score = 31.1 bits (67), Expect = 5.2
Identities = 30/112 (26%), Positives = 45/112 (40%)
Frame = -2
Query: 776 STSDGATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDE 597
S+SDG + R +K + + + G SE E+ + + +T + L
Sbjct: 41 SSSDGKAEKSRQTAKKARVEEASTPKVNKQGRSE--EISESESEETNAPKKTKTEQELPR 98
Query: 596 PSMISDPSDFPTTIKREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 441
P PSD + R + DD S D D+DQ T PSI +E D
Sbjct: 99 PQ---SPSDLDSLDGRSLNDD---GSSDPRDIDQDNRSTSPSIYSPGSVEND 144
>BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein.
Length = 1191
Score = 31.1 bits (67), Expect = 5.2
Identities = 30/112 (26%), Positives = 45/112 (40%)
Frame = -2
Query: 776 STSDGATPRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDE 597
S+SDG + R +K + + + G SE E+ + + +T + L
Sbjct: 41 SSSDGKAEKSRQTAKKARVEEASTPKVNKQGRSE--EISESESEETNAPKKTKTEQELPR 98
Query: 596 PSMISDPSDFPTTIKREVTDDLPPPSDDFVDLDQPTDFTFPSIVKEEPIEPD 441
P PSD + R + DD S D D+DQ T PSI +E D
Sbjct: 99 PQ---SPSDLDSLDGRSLNDD---GSSDPRDIDQDNRSTSPSIYSPGSVEND 144
>AF245115-1|AAF78480.1| 2063|Homo sapiens nuclear receptor coactivator
protein.
Length = 2063
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+K+ PRK +NS ++DL D+ + LEE +Q + + + L P + P
Sbjct: 914 PKKKKPPRKKKNS-QQDLNTPDTRPAGLEEADQPPLPGEQGISLDNSGPKL--PEFSNRP 970
Query: 575 SDFPT-TIKREVTDDLPP 525
+P+ +++ +PP
Sbjct: 971 PGYPSQPVEQRPLQQMPP 988
>AF177388-1|AAF13595.1| 2063|Homo sapiens cancer-amplified
transcriptional coactivator ASC-2 protein.
Length = 2063
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+K+ PRK +NS ++DL D+ + LEE +Q + + + L P + P
Sbjct: 914 PKKKKPPRKKKNS-QQDLNTPDTRPAGLEEADQPPLPGEQGISLDNSGPKL--PEFSNRP 970
Query: 575 SDFPT-TIKREVTDDLPP 525
+P+ +++ +PP
Sbjct: 971 PGYPSQPVEQRPLQQMPP 988
>AF171667-1|AAF71829.1| 2063|Homo sapiens thyroid hormone receptor
binding protein protein.
Length = 2063
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+K+ PRK +NS ++DL D+ + LEE +Q + + + L P + P
Sbjct: 914 PKKKKPPRKKKNS-QQDLNTPDTRPAGLEEADQPPLPGEQGISLDNSGPKL--PEFSNRP 970
Query: 575 SDFPT-TIKREVTDDLPP 525
+P+ +++ +PP
Sbjct: 971 PGYPSQPVEQRPLQQMPP 988
>AF128458-1|AAF37003.1| 2063|Homo sapiens nuclear receptor coactivator
RAP250 protein.
Length = 2063
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+K+ PRK +NS ++DL D+ + LEE +Q + + + L P + P
Sbjct: 914 PKKKKPPRKKKNS-QQDLNTPDTRPAGLEEADQPPLPGEQGISLDNSGPKL--PEFSNRP 970
Query: 575 SDFPT-TIKREVTDDLPP 525
+P+ +++ +PP
Sbjct: 971 PGYPSQPVEQRPLQQMPP 988
>D29956-1|BAA06225.2| 1120|Homo sapiens KIAA0055 protein.
Length = 1120
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 530 PPPSDDFVDLDQPTDFTFPSIVKEEPIEPDMNMVPAMIE 414
PPP ++ DFT+PS+ + P +P PA IE
Sbjct: 321 PPPRRQNEEVSISLDFTYPSLEESIPSKPAAQTPPASIE 359
>BX537420-1|CAD97662.1| 1118|Homo sapiens hypothetical protein
protein.
Length = 1118
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 530 PPPSDDFVDLDQPTDFTFPSIVKEEPIEPDMNMVPAMIE 414
PPP ++ DFT+PS+ + P +P PA IE
Sbjct: 319 PPPRRQNEEVSISLDFTYPSLEESIPSKPAAQTPPASIE 357
>BC110590-1|AAI10591.1| 1118|Homo sapiens ubiquitin specific
peptidase 8 protein.
Length = 1118
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 530 PPPSDDFVDLDQPTDFTFPSIVKEEPIEPDMNMVPAMIE 414
PPP ++ DFT+PS+ + P +P PA IE
Sbjct: 319 PPPRRQNEEVSISLDFTYPSLEESIPSKPAAQTPPASIE 357
>BC051345-1|AAH51345.1| 480|Homo sapiens USP8 protein protein.
Length = 480
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 530 PPPSDDFVDLDQPTDFTFPSIVKEEPIEPDMNMVPAMIE 414
PPP ++ DFT+PS+ + P +P PA IE
Sbjct: 319 PPPRRQNEEVSISLDFTYPSLEESIPSKPAAQTPPASIE 357
>BC038801-1|AAH38801.1| 478|Homo sapiens USP8 protein protein.
Length = 478
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 530 PPPSDDFVDLDQPTDFTFPSIVKEEPIEPDMNMVPAMIE 414
PPP ++ DFT+PS+ + P +P PA IE
Sbjct: 319 PPPRRQNEEVSISLDFTYPSLEESIPSKPAAQTPPASIE 357
>BC026954-1|AAH26954.1| 481|Homo sapiens USP8 protein protein.
Length = 481
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 530 PPPSDDFVDLDQPTDFTFPSIVKEEPIEPDMNMVPAMIE 414
PPP ++ DFT+PS+ + P +P PA IE
Sbjct: 319 PPPRRQNEEVSISLDFTYPSLEESIPSKPAAQTPPASIE 357
>BC015545-1|AAH15545.1| 483|Homo sapiens Unknown (protein for
IMAGE:3914321) protein.
Length = 483
Score = 30.7 bits (66), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 530 PPPSDDFVDLDQPTDFTFPSIVKEEPIEPDMNMVPAMIE 414
PPP ++ DFT+PS+ + P +P PA IE
Sbjct: 319 PPPRRQNEEVSISLDFTYPSLEESIPSKPAAQTPPASIE 357
>BC113380-1|AAI13381.1| 1147|Homo sapiens KIAA1429 protein.
Length = 1147
Score = 30.3 bits (65), Expect = 9.1
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Frame = -2
Query: 728 DQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMISDPSDFPTTIK 552
D+NS+ ++ QYSD G E E+ E+ ++ D + + + ++ D ++ S P + +
Sbjct: 224 DRNSVPQEGQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDEDEDDRRTVDSIPEEEEEDEE 283
Query: 551 REVTDDLPPPSDD-----------FVDLDQPTDFTFPSIVKEEPIEPDMNMVPAM 420
E +D DD DL++ T F +P+ E E D+ VP M
Sbjct: 284 EEGEEDEEGEGDDGYEQISSDEDGIADLERET-FKYPNFDVEYTAE-DLASVPPM 336
>BC112288-1|AAI12289.1| 1147|Homo sapiens hypothetical protein
LOC25962, isoform 2 protein.
Length = 1147
Score = 30.3 bits (65), Expect = 9.1
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Frame = -2
Query: 728 DQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMISDPSDFPTTIK 552
D+NS+ ++ QYSD G E E+ E+ ++ D + + + ++ D ++ S P + +
Sbjct: 224 DRNSVPQEGQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDEDEDDRRTVDSIPEEEEEDEE 283
Query: 551 REVTDDLPPPSDD-----------FVDLDQPTDFTFPSIVKEEPIEPDMNMVPAM 420
E +D DD DL++ T F +P+ E E D+ VP M
Sbjct: 284 EEGEEDEEGEGDDGYEQISSDEDGIADLERET-FKYPNFDVEYTAE-DLASVPPM 336
>AL109824-4|CAB92721.2| 2063|Homo sapiens nuclear receptor coactivator
6 protein.
Length = 2063
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+K+ PRK +NS ++DL D+ + LEE +Q + + + +++ P + P
Sbjct: 914 PKKKKPPRKKKNS-QQDLNTPDTRPAGLEEADQPPLPG--EQGINLDNSGPKLPEFSNRP 970
Query: 575 SDFPT-TIKREVTDDLPP 525
+P+ +++ +PP
Sbjct: 971 PGYPSQPVEQRPLQQMPP 988
>AF208227-1|AAF16403.1| 2001|Homo sapiens transcriptional coactivator
AIB3 protein.
Length = 2001
Score = 30.3 bits (65), Expect = 9.1
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -2
Query: 755 PRKRGRPRKDQNSLEEDLQYSDSGSSELEEVEQKDIVDTIQLCVKPEDTTLDEPSMISDP 576
P+K+ PRK +NS ++DL D+ + LEE +Q + + + +++ P + P
Sbjct: 852 PKKKKPPRKKKNS-QQDLNTPDTRPAGLEEADQPPLPG--EQGINLDNSGPKLPEFSNRP 908
Query: 575 SDFPT-TIKREVTDDLPP 525
+P+ +++ +PP
Sbjct: 909 PGYPSQPVEQRPLQQMPP 926
>AB037850-1|BAA92667.1| 1795|Homo sapiens KIAA1429 protein protein.
Length = 1795
Score = 30.3 bits (65), Expect = 9.1
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Frame = -2
Query: 728 DQNSLEEDLQYSDSGSSELEEVEQ-KDIVDTIQLCVKPEDTTLDEPSMISDPSDFPTTIK 552
D+NS+ ++ QYSD G E E+ E+ ++ D + + + ++ D ++ S P + +
Sbjct: 222 DRNSVPQEGQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDEDEDDRRTVDSIPEEEEEDEE 281
Query: 551 REVTDDLPPPSDD-----------FVDLDQPTDFTFPSIVKEEPIEPDMNMVPAM 420
E +D DD DL++ T F +P+ E E D+ VP M
Sbjct: 282 EEGEEDEEGEGDDGYEQISSDEDGIADLERET-FKYPNFDVEYTAE-DLASVPPM 334
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,910,649
Number of Sequences: 237096
Number of extensions: 2479606
Number of successful extensions: 14013
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 13411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13983
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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