Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15i19
(840 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 28 0.12
DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein. 24 1.5
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 2.7
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 23 2.7
X72577-1|CAA51169.1| 283|Apis mellifera Apidaecin precursor pro... 23 3.5
X72576-1|CAA51168.1| 144|Apis mellifera Apidaecin precursor pro... 23 3.5
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 23 4.6
AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein. 22 6.1
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 8.1
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 8.1
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 8.1
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 27.9 bits (59), Expect = 0.12
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = -2
Query: 584 SDPSDFPTTIKREVTDDLPPPSDDFVDLDQPT 489
SDPSD T I E PP S DLDQ T
Sbjct: 961 SDPSDTVTIITAEEAPSGPPTSIRVDDLDQHT 992
>DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein.
Length = 152
Score = 24.2 bits (50), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 644 DTIQLCVKPEDTTLDE-PSMISDPSD 570
D I LC+K E+ LD+ S++ D S+
Sbjct: 22 DDITLCLKQENLNLDDIDSLLEDESE 47
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 696 VLKIFFQTVLIFTWSASFSRSSTV 767
V +FF + +F W A SRS +
Sbjct: 430 VFPLFFLAINVFYWFAYLSRSERI 453
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 23.4 bits (48), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +2
Query: 116 GEWLPS----PMDFSNASAEPSRCLTFTPL 193
GEWL + P SNAS EP +T++ L
Sbjct: 74 GEWLLTEEKLPKTSSNASVEPDSKVTYSGL 103
>X72577-1|CAA51169.1| 283|Apis mellifera Apidaecin precursor
protein.
Length = 283
Score = 23.0 bits (47), Expect = 3.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 581 DPSDFPTTIKREVTDDLPPPSDDFVDLDQPTDFTFPSIVKE-EP-IEPDMN 435
DP PT ++RE + P ++ V + QP P + +E EP EP N
Sbjct: 23 DPPTRPTRLRREAKPEAEPGNNRPVYIPQPRP-PHPRLRREAEPEAEPGNN 72
>X72576-1|CAA51168.1| 144|Apis mellifera Apidaecin precursor
protein.
Length = 144
Score = 23.0 bits (47), Expect = 3.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 581 DPSDFPTTIKREVTDDLPPPSDDFVDLDQPTDFTFPSIVKE-EP-IEPDMN 435
DP PT ++RE + P ++ V + QP P + +E EP EP N
Sbjct: 24 DPPTRPTRLRREAEPEAEPGNNRPVYIPQPRP-PHPRLRREAEPEAEPGNN 73
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.6 bits (46), Expect = 4.6
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -2
Query: 572 DFPTTIKREVTDDLPPPSDDFVDLDQPTD 486
D T + + DD+PP +++ + D+ D
Sbjct: 303 DIKTELSTGMNDDIPPETEEEEENDKKLD 331
>AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein.
Length = 388
Score = 22.2 bits (45), Expect = 6.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 654 FLFHLFQFRTTTVRVLK 704
FLF F FRT T V+K
Sbjct: 224 FLFGDFNFRTDTAGVIK 240
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 365 WQPDPAIQDDLQVTDS 318
W PDPAI L+ T S
Sbjct: 201 WSPDPAINRRLKETYS 216
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 365 WQPDPAIQDDLQVTDS 318
W PDPAI L+ T S
Sbjct: 201 WSPDPAINRRLKETYS 216
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 8.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 365 WQPDPAIQDDLQVTDS 318
W PDPAI L+ T S
Sbjct: 201 WSPDPAINRRLKETYS 216
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,308
Number of Sequences: 438
Number of extensions: 4483
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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