Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15i07
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    27   0.24 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    27   0.24 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.73 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   5.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.8  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -2

Query: 508 VRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIEL 377
           ++DL +N H H  ++    K   EK+   +++  ++S+    +L
Sbjct: 48  IKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -2

Query: 508 VRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIEL 377
           ++DL +N H H  ++    K   EK+   +++  ++S+    +L
Sbjct: 31  IKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKL 74


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 545 WFVNHHFTGLWHLERHISDFSVHTIVYNLRISALCYLF*VILSPCGYSSEEYLFTY 712
           W++NH +     L   I D  ++T  + LR +   +L         Y  EEYL+++
Sbjct: 208 WYLNHDYNLENKLNYFIEDIGLNTYYFFLRQAFPFWLPSKEYDLPDYRGEEYLYSH 263


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 545 WFVNHHFTGLWHLERHISDFSVHTIVYNLRISALCYLF*VILSPCGYSSEEYLFTY 712
           W++NH +     L   I D  ++T  + LR +   +L         Y  EEYL+++
Sbjct: 208 WYLNHDYNLENKLIYFIEDIGLNTYYFFLRQAFPFWLPSKEYDLPDYRGEEYLYSH 263


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 514 SEVRDLINNAHKHTTDLLTKHKPNIEKVAERLLKQEILSRDDMIELL 374
           SE  D+ +   +H T++       I + ++RL   + L R+D I LL
Sbjct: 365 SEGEDISDYKFRHITEITILTVQLIVEFSKRLPGFDELMREDQIALL 411


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 694 FGRIT-TGAQDDLKKITQSAYAQIVHYGMN 608
           FG  T  GAQ DLK + Q A + +V  G++
Sbjct: 176 FGSWTYNGAQVDLKHMKQEAGSNLVAKGID 205



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 226 MGWFPAVVLWAVSPYSNP 279
           + W P +++   +PYS P
Sbjct: 355 LNWMPRLLMMRRTPYSTP 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,004
Number of Sequences: 438
Number of extensions: 5163
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)