Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15i02
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo... 48 4e-07
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 29 0.26
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 29 0.35
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 29 0.35
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 29 0.35
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 28 0.60
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 26 2.4
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 2.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 3.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 3.2
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 4.3
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 25 4.3
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 4.3
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 5.6
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 5.6
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 5.6
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 24 7.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 9.8
>SPBC4C3.04c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 100
Score = 48.4 bits (110), Expect = 4e-07
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = -1
Query: 267 NKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNETIKEFYHVENMYTFE 88
+ L + C+ C S + + K + + + P M +++ + ET +F+ +++ + F+
Sbjct: 2 SNLRIVCQHCPSVVFNNKRPDVVKR----PTMSAMLHSETQEDLET-DDFFLLKDPFAFD 56
Query: 87 NIGFTHTV-DNHKYLSCADCDAGPVGY 10
N+ + + +N+K L+CADC+ GP+GY
Sbjct: 57 NVSVSKPLANNYKLLACADCEKGPLGY 83
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 29.1 bits (62), Expect = 0.26
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = -1
Query: 345 QYIMAEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 166
Q ++E D P+ + E +N + +C SK+LD NYI + P +++
Sbjct: 328 QVFLSEYIGDKDPMTYDIALLDETNRNDIEADAYWCLSKLLDGIQDNYIHAQ---PGIRR 384
Query: 165 ASNNDREV 142
NN RE+
Sbjct: 385 QVNNLREL 392
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 28.7 bits (61), Expect = 0.35
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 214 FLIQNFRTAKFALHYEFVFSVFNIFPLL-RFDWRYIIFHF----SHYVLLINYFYTYNLK 378
FL+ T + + F F ++ R W+YIIF F +Y +++ Y YT L
Sbjct: 177 FLVYALLTLVYTPYTVFRMGFKKYFEMIFRHGWKYIIFAFFDVEGNYFVVLAYQYTNMLS 236
Query: 379 AS 384
AS
Sbjct: 237 AS 238
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.35
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 254 CNANFAVRKFWIRNHLIISLKRKIC 180
C AN+ RKF +R+ + + RKIC
Sbjct: 165 CTANYVARKFGVRSAMPEFIARKIC 189
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 0.35
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 283 IFPLLRFDWRYIIFHFSHYVLLIN 354
I+PL + ++YIIFH++ +L IN
Sbjct: 311 IYPLSKSSFQYIIFHYAAGLLFIN 334
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 27.9 bits (59), Expect = 0.60
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 282 VEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQ-QASNNDREVQNETIKEFYHV 109
V G N L F G L + I+ +D +Q A NND +++E I+ YHV
Sbjct: 180 VSMGINLLWGIITFIGISFLPESPRYLISVGRDEEALQIMAKNNDLPIEHEVIQTEYHV 238
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 15 QLDPH-HNLHNSNIYDCQRCA*NLYFQMYTC 104
+LD + HN + SN+Y+C C + Y C
Sbjct: 168 ELDAYLHNEYESNLYECNACR-EIVIAGYVC 197
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 2.4
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = -2
Query: 332 LKWKMMYRQSKRSKGNMLKTEKTNS*CNANFAVRKFWIRNHL----IISLKRKICHLCSK 165
L W + R SK+ N + T K S A F FWI N + R +C +
Sbjct: 315 LFWSLDERFSKQFLPNKISTFKPFSKYPACFKDIAFWINNDFNPNDFYEIIRDVCQDMVE 374
Query: 164 PVTTIEKYRTR 132
V I++Y +
Sbjct: 375 SVNLIDQYTAK 385
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 3.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -1
Query: 303 ETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNET 130
E E+ E ED +N FC SK ++K Q+K +Q + D+ N T
Sbjct: 300 EEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDKGENKKRQ-DDVDQATDNNT 356
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 3.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -1
Query: 303 ETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNET 130
E E+ E ED +N FC SK ++K Q+K +Q + D+ N T
Sbjct: 300 EEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDKGENKKRQ-DDVDQATDNNT 356
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 209 DDFLSKIFEPQNLHCTTSLFFPSSTYSLCSVSIGDTSFSIS 331
D S + P HC + + SS+ LC + G + S+S
Sbjct: 146 DMIYSHAWSPIASHCLIATAYRSSSIRLCDMQSGSYTHSLS 186
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 219 KKSSNYIAQEKDLPLMQQASNNDREVQNETIKEFYHVENMYTFEN 85
KK SN+++ K+ PL+ A ++ F H +M +N
Sbjct: 309 KKLSNFLSHSKEPPLLSTAHHSAYRPSKNIHSMFQHFNSMKKNKN 353
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 174 MQQASNNDREVQNETIKEFYHVE-NMYTFENIGFTH-TVDNHKYLSCADCDAGPV 16
+++A+ +++QNET+K+F E N +IG + + C D A P+
Sbjct: 470 VRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPI 524
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.6 bits (51), Expect = 5.6
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 228 ILDKKSSNYIAQEKDLPLMQQASNNDREVQNETIKEFY-HVENMYTFENI 82
ILD KSS +I QE + L+ + E N +FY ++ +Y + +I
Sbjct: 334 ILDPKSSTFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLYLYLSI 383
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 5.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = -1
Query: 234 SKILDKKSSNYIAQEKDLPLMQQA------SNNDREVQNETIKE 121
SK+ DKK+ N + DL ++ ++ SN D E +N I E
Sbjct: 333 SKVKDKKAKNNEKEVPDLAILDKSEKSKGESNTDEESENLVIVE 376
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 24.6 bits (51), Expect = 5.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 219 KKSSNYIAQEKDLPLMQ-QASNNDREVQNETIKEFYHVENMYTFEN 85
+ S Y + LP QA N+ N +E+ VEN Y F N
Sbjct: 439 QSESTYEYSARQLPKPPVQAWQNENLSSNNKPQEYVGVENDYNFSN 484
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -2
Query: 269 KTNS*CNANFAVRKFWIRNHLIISLKRKIC 180
K + + N+ RKF I+N + + + +C
Sbjct: 311 KNSEIASCNYEARKFGIKNGMYVGTAKNLC 340
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.8 bits (49), Expect = 9.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 73 RKTYIFKCIHVLDMIKFLYSLV--LYFSIVVTGLLHKWQIFLL 195
RK ++ CI V +L SL + + G +H+WQIFLL
Sbjct: 2195 RKLVVWFCISVFLQNFWLSSLNGRSWSYLWDIGNIHQWQIFLL 2237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,829
Number of Sequences: 5004
Number of extensions: 37327
Number of successful extensions: 137
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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