Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15i02
         (396 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U74324-1|AAB18264.1|  123|Homo sapiens guanine nucleotide exchan...    77   2e-14
BT007133-1|AAP35797.1|  123|Homo sapiens RAB interacting factor ...    77   2e-14
BC037392-1|AAH37392.1|  123|Homo sapiens RAB interacting factor ...    77   2e-14
BC018488-1|AAH18488.1|  123|Homo sapiens RAB interacting factor ...    77   2e-14
S78873-1|AAB34955.1|  123|Homo sapiens Mss4 protein.                   76   5e-14
AK223538-1|BAD97258.1|  123|Homo sapiens RAB-interacting factor ...    75   6e-14
BC052259-1|AAH52259.1|  508|Homo sapiens OSBPL6 protein protein.       31   1.8  
AK093902-1|BAC04248.1|  938|Homo sapiens protein ( Homo sapiens ...    31   1.8  
AK027600-1|BAB55223.1|  719|Homo sapiens protein ( Homo sapiens ...    31   1.8  
AF462443-1|AAP97711.1|  898|Homo sapiens OSBP-related protein 6 ...    31   1.8  
AF392448-1|AAL40661.1|  934|Homo sapiens oxysterol-binding prote...    31   1.8  
AF323728-1|AAG53409.1|  934|Homo sapiens OSBP-related protein 6 ...    31   1.8  
AC011743-1|AAY15090.1|  861|Homo sapiens unknown protein.              31   1.8  
AB208898-1|BAD92135.1|  966|Homo sapiens oxysterol-binding prote...    31   1.8  
Z11584-1|CAA77670.1| 2101|Homo sapiens NuMA protein protein.           28   9.7  
BC013023-1|AAH13023.1| 1193|Homo sapiens NUMA1 protein protein.        28   9.7  
BC008345-1|AAH08345.1|  963|Homo sapiens Unknown (protein for IM...    28   9.7  
AB208841-1|BAD92078.1| 1585|Homo sapiens Nuclear mitotic apparat...    28   9.7  

>U74324-1|AAB18264.1|  123|Homo sapiens guanine nucleotide exchange
           factor mss4 protein.
          Length = 123

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = -1

Query: 315 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ--ASNNDREV 142
           + P E        +G+N+  V C+ CGS++L   ++ +  ++  LP M++  A ++    
Sbjct: 1   MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP 60

Query: 141 QNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGY 10
             + ++E + VE+M+ FEN+GFT  V N K+L CADC+ GP+G+
Sbjct: 61  DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGW 104


>BT007133-1|AAP35797.1|  123|Homo sapiens RAB interacting factor
           protein.
          Length = 123

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = -1

Query: 315 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ--ASNNDREV 142
           + P E        +G+N+  V C+ CGS++L   ++ +  ++  LP M++  A ++    
Sbjct: 1   MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP 60

Query: 141 QNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGY 10
             + ++E + VE+M+ FEN+GFT  V N K+L CADC+ GP+G+
Sbjct: 61  DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGW 104


>BC037392-1|AAH37392.1|  123|Homo sapiens RAB interacting factor
           protein.
          Length = 123

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = -1

Query: 315 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ--ASNNDREV 142
           + P E        +G+N+  V C+ CGS++L   ++ +  ++  LP M++  A ++    
Sbjct: 1   MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP 60

Query: 141 QNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGY 10
             + ++E + VE+M+ FEN+GFT  V N K+L CADC+ GP+G+
Sbjct: 61  DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGW 104


>BC018488-1|AAH18488.1|  123|Homo sapiens RAB interacting factor
           protein.
          Length = 123

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = -1

Query: 315 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ--ASNNDREV 142
           + P E        +G+N+  V C+ CGS++L   ++ +  ++  LP M++  A ++    
Sbjct: 1   MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP 60

Query: 141 QNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGY 10
             + ++E + VE+M+ FEN+GFT  V N K+L CADC+ GP+G+
Sbjct: 61  DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCADCEIGPIGW 104


>S78873-1|AAB34955.1|  123|Homo sapiens Mss4 protein.
          Length = 123

 Score = 75.8 bits (178), Expect = 5e-14
 Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
 Frame = -1

Query: 276 DGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ--ASNNDREVQNETIKEFYHVEN 103
           +G+N+  V C+ CGS++L   ++ +  ++  LP M++  A ++      + ++E + VE+
Sbjct: 14  EGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNPDGDLLQEHWLVED 73

Query: 102 MYTFENIGFTHTVDNHKYLSCADCDAGPVGY 10
           M+ FEN+GFT  V N K+L CADC+ GP+G+
Sbjct: 74  MFIFENVGFTKDVGNIKFLVCADCEIGPIGW 104


>AK223538-1|BAD97258.1|  123|Homo sapiens RAB-interacting factor
           variant protein.
          Length = 123

 Score = 75.4 bits (177), Expect = 6e-14
 Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
 Frame = -1

Query: 315 VSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ--ASNNDREV 142
           + P E        +G+N+  V C+ CGS++L   ++ +  ++  LP M++  A ++    
Sbjct: 1   MEPAEQPSELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPALSDGSNP 60

Query: 141 QNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVGY 10
             + ++E + VE+M+ FEN+GFT  V N K+L C DC+ GP+G+
Sbjct: 61  DGDLLQEHWLVEDMFIFENVGFTKDVGNIKFLVCTDCEIGPIGW 104


>BC052259-1|AAH52259.1|  508|Homo sapiens OSBPL6 protein protein.
          Length = 508

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 LPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLS 43
           LPL QQ +N  R   +E++ EF+  + +    +       D+  Y+S
Sbjct: 407 LPLSQQVANESRLSMSESVSEFFDAQEVLLSASSSENEASDDESYIS 453


>AK093902-1|BAC04248.1|  938|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36583 fis, clone TRACH2013123, moderately
           similar to Homo sapiens oxysterol binding
           protein-related protein ).
          Length = 938

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 LPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLS 43
           LPL QQ +N  R   +E++ EF+  + +    +       D+  Y+S
Sbjct: 478 LPLSQQVANESRLPMSESVSEFFDAQEVLLSASSSENEASDDESYIS 524


>AK027600-1|BAB55223.1|  719|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14694 fis, clone NT2RP2005407, weakly similar to
           OXYSTEROL-BINDING PROTEIN. ).
          Length = 719

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 LPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLS 43
           LPL QQ +N  R   +E++ EF+  + +    +       D+  Y+S
Sbjct: 259 LPLSQQVANESRLSMSESVSEFFDAQEVLLSASSSENEASDDESYIS 305


>AF462443-1|AAP97711.1|  898|Homo sapiens OSBP-related protein 6
           isoform protein.
          Length = 898

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 LPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLS 43
           LPL QQ +N  R   +E++ EF+  + +    +       D+  Y+S
Sbjct: 438 LPLSQQVANESRLSMSESVSEFFDAQEVLLSASSSENEASDDESYIS 484


>AF392448-1|AAL40661.1|  934|Homo sapiens oxysterol-binding
           protein-like protein OSBPL6 protein.
          Length = 934

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 LPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLS 43
           LPL QQ +N  R   +E++ EF+  + +    +       D+  Y+S
Sbjct: 474 LPLSQQVANESRLSMSESVSEFFDAQEVLLSASSSENEASDDESYIS 520


>AF323728-1|AAG53409.1|  934|Homo sapiens OSBP-related protein 6
           protein.
          Length = 934

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 LPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLS 43
           LPL QQ +N  R   +E++ EF+  + +    +       D+  Y+S
Sbjct: 474 LPLSQQVANESRLSMSESVSEFFDAQEVLLSASSSENEASDDESYIS 520


>AC011743-1|AAY15090.1|  861|Homo sapiens unknown protein.
          Length = 861

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 LPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLS 43
           LPL QQ +N  R   +E++ EF+  + +    +       D+  Y+S
Sbjct: 478 LPLSQQVANESRLSMSESVSEFFDAQEVLLSASSSENEASDDESYIS 524


>AB208898-1|BAD92135.1|  966|Homo sapiens oxysterol-binding
           protein-like protein 6 isoform a variant protein.
          Length = 966

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 183 LPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLS 43
           LPL QQ +N  R   +E++ EF+  + +    +       D+  Y+S
Sbjct: 506 LPLSQQVANESRLSMSESVSEFFDAQEVLLSASSSENEASDDESYIS 552


>Z11584-1|CAA77670.1| 2101|Homo sapiens NuMA protein protein.
          Length = 2101

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 297  EQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQ 139
            E+R+  ++ + KL  Q +    K+ D   ++ + Q+K   +  Q   + +E Q
Sbjct: 1521 EERQRFQEERQKLTAQVEELSKKLADSDQASKVQQQKLKAVQAQGGESQQEAQ 1573


>BC013023-1|AAH13023.1| 1193|Homo sapiens NUMA1 protein protein.
          Length = 1193

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 297 EQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQ 139
           E+R+  ++ + KL  Q +    K+ D   ++ + Q+K   +  Q   + +E Q
Sbjct: 613 EERQRFQEERQKLTAQVEELSKKLADSDQASKVQQQKLKAVQAQGGESQQEAQ 665


>BC008345-1|AAH08345.1|  963|Homo sapiens Unknown (protein for
           IMAGE:3531356) protein.
          Length = 963

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 297 EQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQ 139
           E+R+  ++ + KL  Q +    K+ D   ++ + Q+K   +  Q   + +E Q
Sbjct: 365 EERQRFQEERQKLTAQVEELSKKLADSDQASKVQQQKLKAVQAQGGESQQEAQ 417


>AB208841-1|BAD92078.1| 1585|Homo sapiens Nuclear mitotic apparatus
            protein 1 variant protein.
          Length = 1585

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -1

Query: 297  EQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQ 139
            E+R+  ++ + KL  Q +    K+ D   ++ + Q+K   +  Q   + +E Q
Sbjct: 1005 EERQRFQEERQKLTAQVEELSKKLADSDQASKVQQQKLKAVQAQGGESQQEAQ 1057


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,186,506
Number of Sequences: 237096
Number of extensions: 1151957
Number of successful extensions: 6724
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6718
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)