Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15i01
         (850 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M57417-1|AAA63229.2|  294|Homo sapiens mucin protein.                  34   0.57 
M22404-1|AAA36333.1|  167|Homo sapiens protein ( Human intestina...    31   4.0  

>M57417-1|AAA63229.2|  294|Homo sapiens mucin protein.
          Length = 294

 Score = 34.3 bits (75), Expect = 0.57
 Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = -1

Query: 847 TTIPIRTSYCSSLRPTSIMARLRNTRAFIDTKTVRPRKCLMTVQAR-PHPSTTLNWRSSA 671
           TT PI T+   +  PT    R         T TV P     + Q+  P P TT N  +  
Sbjct: 164 TTTPITTTTTVTPTPTPTGTRYPTPTPITTTTTVTPTPTPTSTQSTTPTPITTTNTVTPT 223

Query: 670 PNPVFTFTTTKTAALRNT 617
           P P  T T T T     T
Sbjct: 224 PTPTGTQTPTPTPITTTT 241


>M22404-1|AAA36333.1|  167|Homo sapiens protein ( Human intestinal
           mucin mRNA, partial cds, clone SMUC 40. ).
          Length = 167

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = -1

Query: 847 TTIPIRTSYCSSLRPTSIMARLRNTRAFIDTKTVRPRKCLMTVQA-RPHPSTTLNWRSSA 671
           TT PI T+   +  PT    +         T TV P       Q   P P TT    +  
Sbjct: 73  TTTPITTTTTVTPTPTPTGTQTPTPTPITTTTTVTPTPTPTGTQTPTPTPITTTTTVTPT 132

Query: 670 PNPVFTFTTTKTAALRNT 617
           P P  T T T T    NT
Sbjct: 133 PTPTGTQTPTSTPITTNT 150


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,304,304
Number of Sequences: 237096
Number of extensions: 2331398
Number of successful extensions: 12395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12392
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)