Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15h24
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 498 VV*LATS*SQPYWTRTVRRRRSLWPCCSPEAASCVSSCPTQRDKLYNN 355
           +V  +T+ S+ +  R      +L  CC  +A  C  +CP    K YN+
Sbjct: 724 IVSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPA-GCKCYND 770


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 244 ILKQPVSVTIGKKCL*YLYWQKPV 315
           +L+ P   +IG KCL YL++ K +
Sbjct: 385 LLRLPAIRSIGLKCLEYLFFFKMI 408


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 244 ILKQPVSVTIGKKCL*YLYWQKPV 315
           +L+ P   +IG KCL YL++ K +
Sbjct: 385 LLRLPAIRSIGLKCLEYLFFFKMI 408


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 674 RASRECCKHKEELPPEPVHAE 736
           R    C  H   LPP P+H E
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTE 449


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 674 RASRECCKHKEELPPEPVHAE 736
           R    C  H   LPP P+H E
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTE 449


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 63  YDIISINLIG*PIVVPIF 10
           Y+II+I  I  P+ VPI+
Sbjct: 325 YNIINIEQIPVPVPVPIY 342


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 63  YDIISINLIG*PIVVPIF 10
           Y+II+I  I  P+ VPI+
Sbjct: 336 YNIINIEQIPVPVPVPIY 353


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 63  YDIISINLIG*PIVVPIF 10
           Y+II+I  I  P+ VPI+
Sbjct: 354 YNIINIEQIPVPVPVPIY 371


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 354 CYCKACRVVLGRKRHMR 404
           C C+ C++   R++ MR
Sbjct: 4   CTCEKCKITANRQQVMR 20


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 63  YDIISINLIG*PIVVPIF 10
           Y+II+I  I  P+ VPI+
Sbjct: 356 YNIINIEQIPVPVPVPIY 373


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 519 ETATPVALKFVGNTSVMRQS 578
           +T  PVA+   G+TS++  S
Sbjct: 543 QTVNPVAINIPGDTSIIVDS 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,910
Number of Sequences: 438
Number of extensions: 4990
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)