Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15h23
         (280 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   1.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   2.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   6.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          19   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      19   8.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 277 LVNINFVHGLV*RRMNRSKPR-VGSSYSTSALNVC 176
           +VNIN   GL    MNR++P  + S  + + L  C
Sbjct: 140 IVNINDASGLNLLPMNRNRPAYLASKCALTTLTDC 174


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 95  TLPSTLRINLQQH*NLTTY 151
           +LP T+  +L+ H N+T Y
Sbjct: 168 SLPQTIVFHLETHPNVTWY 186


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +1

Query: 10  GSYMXSDV*LLINISASYTLWPTFHSQLYSTVDTSN*FTATLKSHNIS 153
           G    SD+  +I     +  WP+F+S      D       TL S + S
Sbjct: 204 GPSYNSDIFAMIGTIFLWLFWPSFNSAALEGDDQQRAIINTLLSISAS 251


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 85  NGKLARVYMMPIYL*VIKHH 26
           N KLAR  +  IYL  ++ H
Sbjct: 678 NPKLARSVLYKIYLNTMESH 697


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 224 TPIHPTLYQSMNKINI 271
           T  HP LYQ     N+
Sbjct: 49  TVYHPELYQKARTFNL 64


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 224 TPIHPTLYQSMNKINI 271
           T  HP LYQ     N+
Sbjct: 49  TVYHPELYQKARTFNL 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,588
Number of Sequences: 438
Number of extensions: 1448
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)